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WormBase Tree Display for Gene: WBGene00021461

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Name Class

WBGene00021461SMapS_parentSequenceY39G10AR
IdentityVersion3
NameCGC_namenekl-1Person_evidenceWBPerson353
Sequence_nameY39G10AR.3
Molecular_nameY39G10AR.3a
Y39G10AR.3a.1
CE49798
Y39G10AR.3b
CE49838
Y39G10AR.3b.1
Y39G10AR.3c
Y39G10AR.3d
Other_nameCELE_Y39G10AR.3Accession_evidenceNDBBX284601
Public_namenekl-1
DB_infoDatabase (14)
SpeciesCaenorhabditis elegans
History (2)
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnekl
Allele (387)
StrainWBStrain00032153
WBStrain00052052
WBStrain00052053
RNASeq_FPKM (74)
GO_annotation (12)
OrthologWBGene00090562Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00066652Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WBGene00026730Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00194267Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00153382Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00127077Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00056142Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00227672Brugia malayiFrom_analysisWormBase-Compara
WBGene00228821Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12357Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g11464Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g3749Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11101Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7500Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6176Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g7929Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g19147Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00046.g2469Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03044.g17740Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_03049.g17747Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nekl-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17120Caenorhabditis tropicalisFrom_analysisWormBase-Compara
GCK72_003057Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05671Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1610Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g23227Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10285600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g327Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237517Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00240658Onchocerca volvulusFrom_analysisWormBase-Compara
FB:FBgn0045980Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-020509-1Danio rerioFrom_analysisInparanoid
OrthoInspector
SonicParanoid
HGNC:18591Homo sapiensFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
HGNC:13387Homo sapiensFrom_analysisInparanoid
OrthoInspector
SonicParanoid
MGI:2387995Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
RGD:1306897Rattus norvegicusFrom_analysisInparanoid
OrthoInspector
SonicParanoid
RGD:1307187Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
ParalogWBGene00017033Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017578Caenorhabditis elegansFrom_analysisPanther
WBGene00022631Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00008956Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013694Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020324Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable protein serine/threonine kinase activity. Predicted to be involved in phosphorylation. Predicted to be located in nucleus. Expressed in amphid neurons and lumbar neurons. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome; nephronophthisis 9; and renal-hepatic-pancreatic dysplasia. Is an ortholog of human NEK9 (NIMA related kinase 9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0060558Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18591)
DOID:0111120Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13387)
DOID:0060259Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:13387)
Molecular_infoCorresponding_CDSY39G10AR.3a
Y39G10AR.3b
Corresponding_CDS_historyY39G10AR.3:wp124
Y39G10AR.3:wp127
Y39G10AR.3:wp243
Corresponding_transcriptY39G10AR.3c
Y39G10AR.3d
Y39G10AR.3a.1
Y39G10AR.3b.1
Other_sequence (12)
Associated_feature (14)
Experimental_infoRNAi_resultWBRNAi00004597Inferred_automaticallyRNAi_primary
WBRNAi00056276Inferred_automaticallyRNAi_primary
WBRNAi00056277Inferred_automaticallyRNAi_primary
Expr_patternExpr12765
Expr1025642
Expr1039376
Expr1159759
Expr2013952
Expr2032191
Drives_constructWBCnstr00022797
Microarray_results (28)
Expression_cluster (132)
Map_infoMapIPosition-8.92543Error0.029913
PositivePositive_cloneY39G10ARInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027258
WBPaper00031387
WBPaper00038491
WBPaper00049300
WBPaper00055090
WBPaper00061306
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene