WormBase Tree Display for Gene: WBGene00022134

WBGene00022134 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 2
    Name: CGC_name: hrpu-2 Person_evidence: WBPerson1824
      Sequence_name: Y71G10AL.1
      Molecular_name: Y71G10AL.1a
        Y71G10AL.1a.1
        CE40883
        Y71G10AL.1b
        CE40884
        Y71G10AL.1b.1
      Other_name: Y71G10AL.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y71G10AR.c Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y71G10AL.1 Accession_evidence: NDB BX284604
      Public_name: hrpu-2
    DB_info: Database: AceView gene 4C963
        WormQTL gene WBGene00022134
        WormFlux gene WBGene00022134
        NDB locus_tag CELE_Y71G10AL.1
        NCBI gene 177011
        RefSeq protein NM_171284.5
            NM_171899.6
        TREEFAM TREEFAM_ID TF321135
        TrEMBL UniProtAcc G4SPY0
            G4SPY1
        UniProt_GCRP UniProtAcc G4SPY0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 02 Jul 2017 22:54:02 WBPerson2970 Name_change: CGC_name: hrpu-2
      Acquires_merge: WBGene00022136
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hrpu
    Allele (529)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP4655
    Ortholog: WBGene00070864 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00034559 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00154956 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00123398 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00229113 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g8209 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8144 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9853 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g22309 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4788 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13262 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1055 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6283 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16229 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00238.g7626 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y71G10AL.1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10674 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00446.g11478 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17414 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016110 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03032 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_40035300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9778 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248231 Onchocerca volvulus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in AVK based on RNA-seq studies. Is affected by several genes including daf-2; clk-1; and aak-2 based on microarray; RNA-seq; and proteomic studies. Is affected by seven chemicals including rotenone; stavudine; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y71G10AL.1a
      Y71G10AL.1b
    Corresponding_CDS_history: Y71G10AL.1:wp82
      Y71G10AL.1a:wp174
      Y71G10AL.1b:wp131
      Y71G10AL.1b:wp174
    Corresponding_transcript: Y71G10AL.1a.1
      Y71G10AL.1b.1
    Associated_feature (21)
  Experimental_info: RNAi_result: WBRNAi00069271 Inferred_automatically: RNAi_primary
      WBRNAi00069270 Inferred_automatically: RNAi_primary
      WBRNAi00012396 Inferred_automatically: RNAi_primary
      WBRNAi00069272 Inferred_automatically: RNAi_primary
      WBRNAi00058187 Inferred_automatically: RNAi_primary
      WBRNAi00058189 Inferred_automatically: RNAi_primary
      WBRNAi00069269 Inferred_automatically: RNAi_primary
      WBRNAi00037785 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13443
      Expr13444
      Expr1027656
      Expr1039744
      Expr1161606
      Expr2008294
      Expr2026534
    Drives_construct: WBCnstr00039537
    Construct_product: WBCnstr00039538
    Microarray_results (31)
    Expression_cluster (110)
    Interaction (17)
  Map_info: Map: IV Position: -9.32184
    Positive: Positive_clone: Y71G10AL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00053447
    WBPaper00061547
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene