WormBase Tree Display for Gene: WBGene00022388

WBGene00022388 SMap: S_parent: Sequence: Y95B8A
  Identity: Version: 3
    Name: CGC_name: zfr-1 Person_evidence: WBPerson260
      Sequence_name: Y95B8A.8
      Molecular_name: Y95B8A.8
        Y95B8A.8.1
        CE45830
      Other_name: CELE_Y95B8A.8 Accession_evidence: NDB BX284601
      Public_name: zfr-1
    DB_info: Database: AceView gene 1B323
        WormQTL gene WBGene00022388
        WormFlux gene WBGene00022388
        NDB locus_tag CELE_Y95B8A.8
        Panther gene CAEEL|WormBase=WBGene00022388|UniProtKB=E9RKC7
          family PTHR45762
        NCBI gene 190806
        RefSeq protein NM_058384.5
        TREEFAM TREEFAM_ID TF320194
        TrEMBL UniProtAcc E9RKC7
        UniProt_GCRP UniProtAcc E9RKC7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Feb 2011 11:09:22 WBPerson1867 Event: Acquires_merge: WBGene00022387
        3 19 Apr 2021 01:27:01 WBPerson1983 Name_change: CGC_name: zfr-1
      Acquires_merge: WBGene00022387
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zfr
    Allele (529)
    Strain: WBStrain00051934
    RNASeq_FPKM (74)
    GO_annotation: 00008500
      00008501
      00008502
      00008503
      00008504
      00008505
      00008506
      00008507
      00126509
      00126510
    Ortholog: WBGene00060964 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037947 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00142145 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00144080 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00126091 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00095300 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00227464 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10008 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6091 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5199 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17892 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g10963 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g780 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6593 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4773 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29662 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g7563 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22942 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00821.g14377 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y95B8A.8 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18610 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02809.g27990 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06309 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001379 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10737 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9040 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10230400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g127 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00218259 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00084056 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00248573 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00261317 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00287177 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0263603 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-378 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-587 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      ZFIN:ZDB-GENE-030131-3151 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-030729-18 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-070705-184 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:6038 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:29189 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:17277 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:16462 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1339973 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:104626 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1341890 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:2143792 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:619734 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      RGD:620673 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      RGD:1304737 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1311890 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00000079 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000080 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008397 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011253 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018857 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Acts upstream of or within with a positive effect on axon guidance. Predicted to be part of spliceosomal complex. Is an ortholog of human ZFR (zinc finger RNA binding protein) and ZFR2 (zinc finger RNA binding protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y95B8A.8
    Corresponding_CDS_history: Y95B8A.8:wp159
      Y95B8A.8:wp224
    Corresponding_transcript: Y95B8A.8.1
    Other_sequence (20)
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor000869
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr11572
      Expr1016278
      Expr1039884
      Expr1162091
      Expr2008520
      Expr2026758
    Microarray_results (35)
    Expression_cluster (96)
    Interaction: WBInteraction000535295
      WBInteraction000549020
      WBInteraction000561405
      WBInteraction000582208
  Map_info: Map: I Position: -18.0947
    Positive: Positive_clone: Y95B8A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028984
    WBPaper00038491
    WBPaper00046088
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene