WormBase Tree Display for Gene: WBGene00024498

WBGene00024498 SMap: S_parent: Sequence: cb25.fpc0023
  Identity: Version: 2
    Name: CGC_name: Cbr-nhr-275 From_analysis: Inferred_from_orthology
      Sequence_name: CBG01233
      Molecular_name: CBG01233
        CBG01233.1
        CBP05947
      Other_name: CBG_01233 Accession_evidence: NDB HE601256
      Public_name: Cbr-nhr-275
    DB_info: Database: NDB locus_tag CBG_01233
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:54 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:51 WBPerson2970 Name_change: CGC_name: Cbr-nhr-275
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000002 1.55735 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        2.08513 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        2.70179 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        4.46288 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.69217 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.88865 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        2.44938 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 2.991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        3.65752 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        4.32403 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        4.8241 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        7.15727 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 6.66921 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        6.88431 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        7.09941 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        6.06955 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        6.07473 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        6.53848 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        6.77949 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 0.097499 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.462847 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        2.4154 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        6.68584 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        1.08099 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        1.69913 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        2.23633 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 1.49096 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.149311 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        1.33368 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        2.09668 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        2.2936 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        3.25352 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        3.65021 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 1.86242 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        2.08863 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        2.21944 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.35025 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.47276 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.58976 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        2.93116 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.97001 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.60951 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        4.08642 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.391666 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.10352 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.30887 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.602 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        2.21505 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        1.24278 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.45544 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.93907 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 2.21505 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        2.86413 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.67062 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        3.21493 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127800
      00127801
      00127802
      00127803
    Ortholog: WBGene00003649 Caenorhabditis elegans From_analysis: OrthoMCL
            WormBase-Compara
      WBGene00021163 Caenorhabditis elegans From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00081003 Caenorhabditis remanei From_analysis: OMA
      WBGene00156807 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00056667 Caenorhabditis remanei From_analysis: Inparanoid_8
      CBOVI.g8922 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g3973 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g6169 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g670 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g8466 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2358 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g2763 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11807 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g11808 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15585 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15586 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15587 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15588 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15589 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15590 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15591 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15592 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15593 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15594 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15595 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15596 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15597 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15598 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15599 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15601 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15602 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g15603 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g1936 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g20405 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g20408 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g5881 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g5882 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g5883 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g6346 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19989 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00199.g6819 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00199.g6820 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00199.g6821 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00498.g11557 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g17846 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold566.g4109 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02681.g27512 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02728 Caenorhabditis latens From_analysis: WormBase-Compara
      WBGene00223242 Brugia malayi From_analysis: WormBase-Compara
      chrV_pilon.g13439 Caenorhabditis elegans From_analysis: WormBase-Compara
      chrV_pilon.g13443 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242085 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00288616 Trichuris muris From_analysis: WormBase-Compara
    Paralog (220)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-275. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG01233
    Corresponding_CDS_history: CBG01233:bp194
    Corresponding_transcript: CBG01233.1
    Other_sequence: CRC08043_1
      CR06239
      CBC07202_1
  Experimental_info: Expr_pattern: Expr1062134
    Microarray_results: GPL8303_CB6_WBGene00024498_A
      GPL14143_CBG01233_646-705_0.897_25_C
      GPL14143_CBG01233_988-1047_0.927_8_B
      GPL14143_CBG01233_1212-1271_0.909_16_A
  Method: Gene