WormBase Tree Display for Gene: WBGene00031129

WBGene00031129 SMap: S_parent: Sequence: cb25.fpc2220c
  Identity: Version: 2
    Name: CGC_name: Cbr-rop-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG09566
      Molecular_name: CBG09566
        CBG09566.1
        CBP02325
      Other_name: CBG_09566 Accession_evidence: NDB HE600998
      Public_name: Cbr-rop-1
    DB_info: Database: NDB locus_tag CBG_09566
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:00 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-rop-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rop
    RNASeq_FPKM: WBls:0000002 101.674 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        106.228 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        117.865 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        99.1455 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        109.77 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        118.298 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        154.508 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 101.531 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        83.3692 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        92.4501 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        113.639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        99.5131 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 34.943 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        35.6831 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        36.4232 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        36.406 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        36.5846 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        36.696 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        39.1231 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 119.634 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        19.6981 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        55.0687 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        64.8003 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        124.858 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        79.8147 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        87.3513 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 143.357 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 108.306 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        147.835 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        151.374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        323.031 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        51.697 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        65.2374 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 109.848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        118.673 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        121.369 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        123.572 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        128.47 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        128.486 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        111.364 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        114.26 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        85.2292 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        97.475 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        48.5016 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        54.915 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        57.932 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        64.1202 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        65.5408 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        101.718 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        57.371 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        61.0261 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 101.531 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        98.3657 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        100.338 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        95.8459 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00134595
    Ortholog: WBGene00004405 Caenorhabditis elegans From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059105 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00163299 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00092853 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00126160 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g1625 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1626 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1630 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1631 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g1811 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g10028 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g10029 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g4187 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g16414 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4399 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18027 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1482 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP31.g1514 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g527 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g4996 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g7505 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10687 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g28990 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g2263 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00010.g770 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_04861.g19172 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-rop-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold516.g2689 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00137.g5343 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23866 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017569 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05780 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10431 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g13318 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g21805 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50012600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50013000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50023100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_50176300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00222423 Brugia malayi From_analysis: WormBase-Compara
      chrV_pilon.g15469 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00241087 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00248711 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00090448 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00294310 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Is an ortholog of C. elegans rop-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG09566
    Corresponding_CDS_history: CBG09566:bp194
    Corresponding_transcript: CBG09566.1
    Other_sequence (57)
  Experimental_info: Expr_pattern: Expr1063057
    Microarray_results: GPL8303_CB6_WBGene00031129_A
      GPL8303_CB6_WBGene00031129_B
      GPL8303_CB6_WBGene00031129_C
      GPL14143_CBG09566_1079-1138_0.906_27_C
      GPL14143_CBG09566_1315-1374_0.820_108_B
      GPL14143_CBG09566_1576-1635_0.943_5_A
  Method: Gene