WormBase Tree Display for Gene: WBGene00106999

WBGene00106999 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 6
    Name: CGC_name: Ppa-kars-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA17445
      Molecular_name: PPA17445
        PPA17445.1
        PP57035
      Other_name: GENEPREDICTION_SNAP300000074140
        Ppa-krs-1 From_analysis: Inferred_from_orthology
        UMS-S139-20.50 Person_evidence: WBPerson606
      Public_name: Ppa-kars-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:05 WBPerson4055 Event: Imported: from NGASP
        2 29 Jan 2010 10:38:19 WBPerson2970 Name_change: CGC_name: Ppa-kars-1
                Other_name: Ppa-krs-1
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Ppa-kars-1
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-kars-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: kars
    RNASeq_FPKM: WBls:0000032 71.8831 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 50.7296 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        71.8831 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        80.3058 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00181066
      00181067
      00181068
      00181069
      00181070
      00181071
      00181072
      00181073
    Ortholog: WBGene00042783 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00054252 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00163633 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00126785 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00234181 Brugia malayi From_analysis: WormBase-Compara
      WBGene00002238 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239378 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g7518 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3583 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4409 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1258 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17416 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g2114 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10005 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21346 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g7609 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8406 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00619.g12860 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_08981.g21816 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_12555.g23812 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-kars-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12167 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00302.g9025 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16975 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006415 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14848 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g10419 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20263810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4927 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00264182 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289143 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00090213 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00094728 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276427 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity; lysine-tRNA ligase activity; and nucleic acid binding activity. Predicted to be involved in lysyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of C. elegans kars-1. In C. elegans, kars-1 is involved in several processes, including determination of adult lifespan; positive regulation of nematode larval development; and regulation of brood size. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA17445
    Corresponding_transcript: PPA17445.1
    Other_sequence (166)
  Remark: [190208 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene