WormBase Tree Display for Gene: WBGene00109249

WBGene00109249 SMap: S_parent: Sequence: PPA_ChrX
  Identity: Version: 3
    Name: CGC_name: Ppa-bcat-1 From_analysis: Inferred_from_orthology
      Sequence_name: PPA19695
      Molecular_name: PPA19695
        PPA19695.1
        PP72311
      Other_name: GENEPREDICTION_SNAP300000076530
        GENEPREDICTION_SNAP300000080931
        UMM-S285-6.8 Person_evidence: WBPerson606
      Public_name: Ppa-bcat-1
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00113593
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-bcat-1
      Acquires_merge: WBGene00113593
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bcat
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 0.97401 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        2.92203 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    GO_annotation: 00182133
      00182134
      00182135
    Ortholog: WBGene00001149 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00023554 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00051181 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140799 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00120381 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00225000 Brugia malayi From_analysis: WormBase-Compara
      WBGene00241255 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g3162 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2361 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP21.g9547 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13132 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g17742 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4453 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g21400 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10174 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20520 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29792 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g944 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g945 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00020.g1263 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-bcat-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18830 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00213.g7182 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_00533.g12543 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00006 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024931 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12206 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11370 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0219600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20322 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00265252 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00267566 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00286298 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00115639 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00089913 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00118823 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00273300 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable branched-chain-amino-acid transaminase activity. Predicted to be involved in branched-chain amino acid metabolic process. Is an ortholog of C. elegans bcat-1. In C. elegans, bcat-1 is involved in branched-chain amino acid catabolic process; embryo development; and nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA19695
    Corresponding_transcript: PPA19695.1
    Other_sequence (55)
  Experimental_info: Microarray_results: GPL14372_Probes_4190
      GPL14372_Probes_4191
      GPL14372_Probes_43534
      GPL14372_Probes_43535
    Expression_cluster: WBPaper00041207:PP_dauer_down
  Method: Gene