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WormBase Tree Display for Gene: WBGene00135142

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Name Class

WBGene00135142SMapS_parentSequenceCjap.Contig17796
IdentityVersion5
NameSequence_nameCJA15938
Molecular_nameCJA15938a
CJA15938a.1
JA48949
CJA15938b
JA48125
CJA15938b.1
Public_nameCJA15938
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-nca-1
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
401 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCjp-unc-77.2
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000041.37016From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:00000272.23039From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:00000381.95944From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
2.55046From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
3.14147From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000410.025554From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
0.054605From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
0.074667From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
0.110756From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
0.124599From_analysisRNASeq.japonica.WBls:0000041.control_median
0.138442From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
0.216093From_analysisRNASeq.japonica.WBls:0000041.control_mean
0.262646From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
0.516457From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
0.545614From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
WBls:00001010.262646From_analysisRNASeq.japonica.total_over_all_stages.control_median
0.802323From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00199361
00199362
00199363
00199364
00199365
OrthologWBGene00006809Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00066082Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00140494Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00154155Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00153171Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00027947Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00222695Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8570Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g184Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g185Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14560Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g16683Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21109Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10428Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7911Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7912Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10214Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g2263Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g29255Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10670Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_16627.g25421Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-77Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17351Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00045.g2384Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18713Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_18714Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_20372Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013653Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12811Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14329Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40161400Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00073165Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00074869Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00080174Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00084742Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00092845Pristionchus pacificusFrom_analysisWormBase-Compara
chrIV_pilon.g10560Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245319Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266153Strongyloides rattiFrom_analysisWormBase-Compara
Paralog (11)
Structured_descriptionAutomated_descriptionPredicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans unc-77. In C. elegans, unc-77 is involved in positive regulation of GABAergic synaptic transmission; positive regulation of cholinergic synaptic transmission; and positive regulation of locomotion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA15938a
CJA15938b
Corresponding_transcriptCJA15938a.1
CJA15938b.1
Other_sequence (16)
Experimental_infoExpr_patternExpr1071107
Expr1079923
Microarray_resultsGPL14145_CJA15938_1575-1634_0.948_1_A
GPL14145_CJA15938_1578-1637_0.933_2_B
GPL14145_CJA15938_1684-1743_0.933_3_C
GPL14145_CJA21832_337-396_0.917_1_A
Remark[180319 gw3] The CGC name Cjp-nca-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
[210528 pad] The CGC name Cjp-unc-77.2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene