WormBase Tree Display for Gene: WBGene00223345

WBGene00223345 SMap: S_parent: Sequence: Bm_v4_Chr2_contig_001
  Identity: Version: 6
    Name: CGC_name: Bma-pde-3 From_analysis: Inferred_from_orthology
      Sequence_name: Bm3084
      Molecular_name: Bm3084
        Bm3084.1
        BM44778
      Other_name: Bm-pde-3
        TAG3084 Curator_confirmed: WBPerson4055
        Bm1_24025A Curator_confirmed: WBPerson4055
        Bm1_24025 Person_evidence: WBPerson5841
      Public_name: Bma-pde-3
    Species: Brugia malayi
    History: Version_change: 1 10 Dec 2012 14:43:24 WBPerson4055 Event: Created
        2 05 Jul 2013 11:43:21 WBPerson4055 Name_change: CGC_name: Bma-pde-3
                Other_name: Bm-pde-3
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Bma-pde-3
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Bma-pde-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pde
    RNASeq_FPKM (11)
    GO_annotation: 00240164
      00240165
      00240166
    Contained_in_operon: BMOP2008
    Ortholog: WBGene00142550 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00194517 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00039794 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g12768 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4002 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g11235 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14690 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9756 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g27174 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3655 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9382 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g17379 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g23380 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g5390 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5706 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00628.g12947 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_26026.g27365 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pde-3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19550 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00476.g11874 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09815 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006636 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02602 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g8628 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20057600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00008443 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00054465 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00111879 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00138051 Caenorhabditis japonica From_analysis: WormBase-Compara
      chrII_pilon.g6630 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247717 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00266956 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294499 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00222780 Brugia malayi From_analysis: WormBase-Compara
      WBGene00225567 Brugia malayi From_analysis: WormBase-Compara
      WBGene00225698 Brugia malayi From_analysis: WormBase-Compara
      WBGene00225808 Brugia malayi From_analysis: WormBase-Compara
      WBGene00227465 Brugia malayi From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable 3',5'-cyclic-nucleotide phosphodiesterase activity. Predicted to be involved in signal transduction. Is an ortholog of C. elegans pde-3. In C. elegans, pde-3 is involved in several processes, including determination of adult lifespan; negative regulation of cGMP-mediated signaling; and response to alkaline pH. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Bm3084
    Corresponding_transcript: Bm3084.1
    Other_sequence (28)
  Experimental_info: Expression_cluster: WBPaper00045439:BM_Cluster_P3
      WBPaper00048706:digestive-tract_enriched
      WBPaper00051007:downregulated_F120_vs_F30
      WBPaper00051007:downregulated_M120_vs_F120
      WBPaper00051007:upregulated_M120_vs_M42
      WBPaper00061765:Adult_vs_Micro_Upregulated
      WBPaper00061765:L4_vs_Micro_Upregulated
  Reference: WBPaper00045439
  Remark: [190208 pad] The CGC name Bma-pde-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Bma-pde-3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene