WormBase Tree Display for Gene: WBGene00000164
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WBGene00000164 | SMap | S_parent | Sequence | F53H8 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | apm-3 | Person_evidence | WBPerson360 | |||||
WBPerson567 | |||||||||
Sequence_name | F53H8.1 | ||||||||
Molecular_name | F53H8.1 | ||||||||
F53H8.1.1 | |||||||||
CE35723 | |||||||||
Other_name | apt-7 | Person_evidence | WBPerson625 | ||||||
CELE_F53H8.1 | Accession_evidence | NDB | BX284606 | ||||||
Public_name | apm-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | apm-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | apm | ||||||||
Allele (34) | |||||||||
Strain | WBStrain00003476 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Contained_in_operon | CEOPX012 | ||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00000150 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00001082 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006777 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00006829 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | apm-3 encodes an adaptin, orthologous to the mu3 subunit of adaptor protein complex 3 (AP-3); APM-3 is also orthologous to human HPS, which when mutated leads to Hermansky-Pudlak syndrome (OMIM:203300); based on structural similarity, APM-3 is predicted to be involved in the formation of intracellular transport vesicles, and genetic analyses indicate that apm-3 activity is required for biogenesis of lysosome-related gut granules. | Paper_evidence | WBPaper00004103 | |||||
WBPaper00004907 | |||||||||
WBPaper00005520 | |||||||||
WBPaper00013041 | |||||||||
WBPaper00025094 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson324 | |||||||||
WBPerson567 | |||||||||
Date_last_updated | 23 Jan 2007 00:00:00 | ||||||||
Automated_description | Involved in lipid storage and lysosome organization. Predicted to be located in cytoplasmic vesicle. Predicted to be part of clathrin adaptor complex. Expressed in muscle cell; pharynx; spermatheca; and vulva. Is an ortholog of human AP3M1 (adaptor related protein complex 3 subunit mu 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F53H8.1 | |||||||
Corresponding_CDS_history | F53H8.1:wp108 | ||||||||
Corresponding_transcript | F53H8.1.1 | ||||||||
Other_sequence | GR18678 | ||||||||
TSC01169_1 | |||||||||
GPC01975_1 | |||||||||
HGC07918_1 | |||||||||
FG978582.1 | |||||||||
PVC00709_1 | |||||||||
MH05144 | |||||||||
Dviv_isotig33517 | |||||||||
EX561781.1 | |||||||||
FC816303.1 | |||||||||
SRC00708_1 | |||||||||
ES740463.1 | |||||||||
GRC03707_1 | |||||||||
XI04438 | |||||||||
JI464832.1 | |||||||||
MJ02924 | |||||||||
Oden_isotig19165 | |||||||||
Tcol_isotig12517 | |||||||||
ES272925.1 | |||||||||
EX557275.1 | |||||||||
ACC21769_1 | |||||||||
ES740156.1 | |||||||||
GP02587 | |||||||||
JI469223.1 | |||||||||
MJC02251_1 | |||||||||
MHC01558_1 | |||||||||
CGC00499_1 | |||||||||
MH05145 | |||||||||
Tcir_isotig08774 | |||||||||
HGC06876_1 | |||||||||
TS03326 | |||||||||
Tcol_isotig21822 | |||||||||
EX565257.1 | |||||||||
Dviv_isotig24158 | |||||||||
ES570155.1 | |||||||||
HBC03413_1 | |||||||||
HG06730 | |||||||||
HBC07869_1 | |||||||||
Acan_isotig16563 | |||||||||
Hbac_isotig03773 | |||||||||
ACC14125_1 | |||||||||
HG10988 | |||||||||
HG00692 | |||||||||
EX552653.1 | |||||||||
Acan_isotig10856 | |||||||||
ES562228.1 | |||||||||
Name_isotig08388 | |||||||||
BXC01980_1 | |||||||||
XIC04925_1 | |||||||||
CGC01189_1 | |||||||||
MAC01622_1 | |||||||||
FG973405.1 | |||||||||
SR01956 | |||||||||
GR18677 | |||||||||
MHC10111_1 | |||||||||
MA02298 | |||||||||
CV199796.1 | |||||||||
Hbac_isotig04762 | |||||||||
EX563412.1 | |||||||||
EX554007.1 | |||||||||
FC810853.1 | |||||||||
FG973401.1 | |||||||||
JI171096.1 | |||||||||
Associated_feature | WBsf647808 | ||||||||
WBsf662451 | |||||||||
WBsf1003904 | |||||||||
WBsf1022191 | |||||||||
WBsf235299 | |||||||||
Experimental_info | RNAi_result (11) | ||||||||
Expr_pattern | Expr3688 | ||||||||
Expr6161 | |||||||||
Expr12910 | |||||||||
Expr1024542 | |||||||||
Expr1030093 | |||||||||
Expr1152010 | |||||||||
Expr2009362 | |||||||||
Expr2027598 | |||||||||
Drives_construct | WBCnstr00003937 | ||||||||
WBCnstr00011600 | |||||||||
WBCnstr00037694 | |||||||||
Construct_product | WBCnstr00022947 | ||||||||
WBCnstr00023054 | |||||||||
WBCnstr00037694 | |||||||||
Microarray_results (22) | |||||||||
Expression_cluster (144) | |||||||||
Interaction (27) | |||||||||
Map_info | Map | X | Position | -18.8908 | Error | 0.004786 | |||
Positive | Positive_clone | F53H8 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4163 | |||||||
4512 | |||||||||
Pseudo_map_position | |||||||||
Reference (18) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |