WormBase Tree Display for Gene: WBGene00007018
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| WBGene00007018 | Evidence | Author_evidence | Bourbon H-M | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C55B7 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | mdt-18 | |||||||
| Sequence_name | C55B7.9 | ||||||||
| Molecular_name | C55B7.9a | ||||||||
| C55B7.9a.1 | |||||||||
| CE09020 | |||||||||
| C55B7.9b | |||||||||
| CE51480 | |||||||||
| C55B7.9a.2 | |||||||||
| C55B7.9a.3 | |||||||||
| C55B7.9b.1 | |||||||||
| Other_name | let-604 | Person_evidence | WBPerson533 | ||||||
| CELE_C55B7.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mdt-18 | ||||||||
| DB_info | Database | AceView | gene | 1H70 | |||||
| WormQTL | gene | WBGene00007018 | |||||||
| WormFlux | gene | WBGene00007018 | |||||||
| NDB | locus_tag | CELE_C55B7.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007018|UniProtKB=Q966M5 | |||||||
| family | PTHR13321 | ||||||||
| NCBI | gene | 183844 | |||||||
| RefSeq | protein | NM_001392449.1 | |||||||
| NM_059468.7 | |||||||||
| SwissProt | UniProtAcc | Q966M5 | |||||||
| TrEMBL | UniProtAcc | A0A131MCJ5 | |||||||
| UniProt_GCRP | UniProtAcc | Q966M5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 14 May 2004 11:48:16 | WBPerson1845 | Event | Created | |||
| 2 | 05 Mar 2015 09:48:14 | WBPerson2970 | Event | Acquires_merge | WBGene00002781 | ||||
| Name_change | Other_name | let-604 | |||||||
| Acquires_merge | WBGene00002781 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | mdt | ||||||||
| Allele (40) | |||||||||
| Legacy_information | [C.elegansII] h293 : sterile adult. OA1: h490 (similar). [KR] | ||||||||
| Strain | WBStrain00003323 | ||||||||
| WBStrain00023756 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOP1324 | ||||||||
| Ortholog (38) | |||||||||
| Structured_description | Automated_description | Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II and termination of RNA polymerase II transcription. Predicted to be located in nucleus. Predicted to be part of core mediator complex and mediator complex. Is an ortholog of human MED18 (mediator complex subunit 18). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55B7.9a | |||||||
| C55B7.9b | |||||||||
| Corresponding_transcript | C55B7.9a.1 | ||||||||
| C55B7.9a.2 | |||||||||
| C55B7.9a.3 | |||||||||
| C55B7.9b.1 | |||||||||
| Other_sequence | EX555014.1 | ||||||||
| ACC16503_1 | |||||||||
| MIC00875_1 | |||||||||
| CSC00430_1 | |||||||||
| PT03993 | |||||||||
| EV852877.1 | |||||||||
| ACC18536_1 | |||||||||
| AY533131.1 | |||||||||
| PTC03717_1 | |||||||||
| DVC01700_1 | |||||||||
| EX555365.1 | |||||||||
| JI479995.1 | |||||||||
| BM00949 | |||||||||
| Hbac_isotig05270 | |||||||||
| CR01153 | |||||||||
| TX01943 | |||||||||
| FD514620.1 | |||||||||
| ASC23397_1 | |||||||||
| BMC11825_1 | |||||||||
| MI00736 | |||||||||
| PEC00443_1 | |||||||||
| AY533130.1 | |||||||||
| CJC07486_1 | |||||||||
| EX558360.1 | |||||||||
| EX560468.1 | |||||||||
| Tcol_isotig07151 | |||||||||
| AY533132.1 | |||||||||
| AY533128.1 | |||||||||
| JI211591.1 | |||||||||
| Dviv_isotig01004 | |||||||||
| PE00537 | |||||||||
| AS07720 | |||||||||
| CRC01767_1 | |||||||||
| AY533129.1 | |||||||||
| FD515817.1 | |||||||||
| TCC02333_1 | |||||||||
| Tcol_isotig07149 | |||||||||
| Dviv_isotig01005 | |||||||||
| Tcol_isotig07150 | |||||||||
| EV851670.1 | |||||||||
| OOC02428_1 | |||||||||
| Acan_isotig12342 | |||||||||
| ACC11789_1 | |||||||||
| BMC01584_1 | |||||||||
| EW742764.1 | |||||||||
| Tcir_isotig01348 | |||||||||
| EX559272.1 | |||||||||
| Associated_feature | WBsf649241 | ||||||||
| WBsf664342 | |||||||||
| WBsf664343 | |||||||||
| WBsf219596 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Chronogram247 | ||||||||
| Expr1016737 | |||||||||
| Expr1033008 | |||||||||
| Expr1147213 | |||||||||
| Expr2013473 | |||||||||
| Expr2031707 | |||||||||
| Drives_construct | WBCnstr00003794 | ||||||||
| WBCnstr00034034 | |||||||||
| Construct_product | WBCnstr00034034 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (105) | |||||||||
| Interaction (71) | |||||||||
| Map_info | Map | I | Position | 1.15876 | Error | 0.001438 | |||
| Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| F37E3 | |||||||||
| K06A5 | |||||||||
| R10A10 | |||||||||
| T23H2 | |||||||||
| Mapping_data | 2_point | 5231 | |||||||
| 5230 | |||||||||
| Pos_neg_data (14) | |||||||||
| Pseudo_map_position | |||||||||
| Reference (14) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Locus positive method : stable transformation rescue [Clucas C][021125 ck1] | |||||||||
| Locus complementation data : Cosmid mix R10A10, F37E3, T23H2, K06A5 and C55B7 rescues let-604. Injections performed on dpy-5(e61)let-604(h293)unc-13(e450)/+ strain and analysed for fertile DpyUncs [Clucas C][021125 ck1] | |||||||||
| Postitive method is stable transformation rescue | |||||||||
| Method | Gene |
