WormBase Tree Display for Gene: WBGene00012256
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| WBGene00012256 | SMap | S_parent | Sequence | W04G3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lpr-5 | Person_evidence | WBPerson637 | |||||
| Sequence_name | W04G3.2 | ||||||||
| Molecular_name | W04G3.2 | ||||||||
| W04G3.2.1 | |||||||||
| CE54471 | |||||||||
| Other_name | cpg-15 | Paper_evidence | WBPaper00053350 | ||||||
| CELE_W04G3.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | lpr-5 | ||||||||
| DB_info | Database | AceView | gene | XL681 | |||||
| WormQTL | gene | WBGene00012256 | |||||||
| WormFlux | gene | WBGene00012256 | |||||||
| NDB | locus_tag | CELE_W04G3.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012256|UniProtKB=Q23163 | |||||||
| family | PTHR37437 | ||||||||
| NCBI | gene | 181297 | |||||||
| RefSeq | protein | NM_077450.8 | |||||||
| TREEFAM | TREEFAM_ID | TF315575 | |||||||
| TrEMBL | UniProtAcc | A0A8S4QB49 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 23 Apr 2010 11:09:26 | WBPerson2970 | Name_change | CGC_name | lpr-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lpr | ||||||||
| Allele (53) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00077483 | ||||||||
| 00077484 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00002393 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00012257 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00012261 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00020571 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | lpr-5 encodes one of seven C. elegans proteins related to the lipocalin family of structurally related, low molecular weight, secreted proteins that bind and transport lipophilic molecules and participate in intercellular signaling; loss of lpr-5 function via RNAi results in defects in locomotion, body morphology, larval lethality, and yolk endocytosis; lpr-5 appears to be expressed in the hypodermal seam cells. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00026629 | |||||||||
| WBPaper00030951 | |||||||||
| WBPaper00032973 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Aug 2011 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Expressed in several structures, including seam cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W04G3.2 | |||||||
| Corresponding_CDS_history | W04G3.2:wp282 | ||||||||
| Corresponding_transcript | W04G3.2.1 | ||||||||
| Other_sequence | CRC07131_1 | ||||||||
| ACC39914_1 | |||||||||
| FD515959.1 | |||||||||
| Hbac_isotig03327 | |||||||||
| FG973364.1 | |||||||||
| Dviv_isotig16611 | |||||||||
| Hbac_isotig04067 | |||||||||
| HBC01041_1 | |||||||||
| FF680582.1 | |||||||||
| Tcir_isotig24825 | |||||||||
| EX912323.1 | |||||||||
| MIC05767_1 | |||||||||
| FF681676.1 | |||||||||
| JI167521.1 | |||||||||
| FG979480.1 | |||||||||
| EY464456.1 | |||||||||
| ZPC00075_1 | |||||||||
| CSC02353_1 | |||||||||
| DIC00995_1 | |||||||||
| PPC10036_1 | |||||||||
| FF680768.1 | |||||||||
| Dviv_isotig27939 | |||||||||
| FG978489.1 | |||||||||
| ES412242.1 | |||||||||
| CBC06968_1 | |||||||||
| BXC01938_1 | |||||||||
| SRC02742_1 | |||||||||
| MI06060 | |||||||||
| Dviv_isotig16610 | |||||||||
| EY467802.1 | |||||||||
| HBC01022_1 | |||||||||
| JI170195.1 | |||||||||
| EX912275.1 | |||||||||
| ACC29625_1 | |||||||||
| JI470876.1 | |||||||||
| Oden_isotig20801 | |||||||||
| SR02670 | |||||||||
| EX910466.1 | |||||||||
| FC816174.1 | |||||||||
| DI01452 | |||||||||
| ZP00143 | |||||||||
| Associated_feature | WBsf648515 | ||||||||
| WBsf1023807 | |||||||||
| WBsf236338 | |||||||||
| WBsf236339 | |||||||||
| WBsf236340 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3369 | ||||||||
| Expr3384 | |||||||||
| Expr1024049 | |||||||||
| Expr1035428 | |||||||||
| Expr1158322 | |||||||||
| Expr2013263 | |||||||||
| Expr2031494 | |||||||||
| Drives_construct | WBCnstr00011366 | ||||||||
| WBCnstr00030046 | |||||||||
| Construct_product | WBCnstr00030046 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (304) | |||||||||
| Interaction (116) | |||||||||
| Map_info | Map | X | Position | 2.85786 | |||||
| Positive | Positive_clone | W04G3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032973 | ||||||||
| WBPaper00048611 | |||||||||
| WBPaper00050227 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00062715 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
