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WormBase Tree Display for Gene: WBGene00039902

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Name Class

WBGene00039902SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-tpi-1From_analysisInferred_from_orthology
Sequence_nameCBG21017
Molecular_nameCBG21017
CBG21017.1
CBP04916
Other_nameCBG_21017Accession_evidenceNDBHE600928
Public_nameCbr-tpi-1
DB_infoDatabaseNDBlocus_tagCBG_21017
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tpi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtpi
RNASeq_FPKMWBls:0000002445.986From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
451.028From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
457.391From_analysisRNASeq.briggsae.WBls:0000002.control_mean
475.16From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
248.792From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
405.241From_analysisRNASeq.briggsae.WBls:0000002.control_mean
448.507From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:0000003250.327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
282.445From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
314.564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
299.903From_analysisRNASeq.briggsae.WBls:0000003.control_mean
334.818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004145.827From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
152.213From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
158.599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
149.034From_analysisRNASeq.briggsae.WBls:0000004.control_mean
159.854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
182.252From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
98.6389From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027151.31From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
166.382From_analysisRNASeq.briggsae.WBls:0000027.control_mean
281.185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
66.6501From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
216.247From_analysisRNASeq.briggsae.WBls:0000027.control_median
226.247From_analysisRNASeq.briggsae.WBls:0000027.control_mean
405.842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035627.394From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038259.254From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
315.365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
412.674From_analysisRNASeq.briggsae.WBls:0000038.control_median
487.727From_analysisRNASeq.briggsae.WBls:0000038.control_mean
509.983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
866.305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041357.583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
397.222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
417.52From_analysisRNASeq.briggsae.WBls:0000041.control_mean
418.111From_analysisRNASeq.briggsae.WBls:0000041.control_median
439From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
476.273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
404.588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
421.794From_analysisRNASeq.briggsae.WBls:0000041.control_median
445.287From_analysisRNASeq.briggsae.WBls:0000041.control_mean
597.058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:0000063192.887From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
194.154From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
199.922From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
203.933From_analysisRNASeq.briggsae.WBls:0000063.control_mean
205.436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
227.268From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
202.679From_analysisRNASeq.briggsae.WBls:0000063.control_median
257.474From_analysisRNASeq.briggsae.WBls:0000063.control_mean
525.179From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101315.365From_analysisRNASeq.briggsae.total_over_all_stages.control_median
338.733From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
316.282From_analysisRNASeq.briggsae.total_over_all_stages.control_median
336.323From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143388
Ortholog (32)
Structured_descriptionAutomated_descriptionPredicted to enable triose-phosphate isomerase activity. Is an ortholog of C. elegans tpi-1. In C. elegans, tpi-1 is involved in cell redox homeostasis and determination of adult lifespan.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21017
Corresponding_CDS_historyCBG21017:bp194
Corresponding_transcriptCBG21017.1
Other_sequenceCR08660
EX011985.1
CJC11952_1
OVC00783_1
ACC08801_1
PPC04688_1
EX915769.1
Oden_isotig06813
FE913769.1
NAC02287_1
GRC04976_1
SS00312
Tcir_isotig29891
ES561782.1
Tcir_isotig06095
EX540300.1
SSC02256_1
MIC06701_1
BMC00109_1
EX566704.1
Hbac_isotig03263
JI173411.1
EV853732.1
BUC02082_1
NB07351
Acan_isotig01785
TS05156
BMC02857_1
CN478385.1
EX008808.1
TVC00886_1
TDC00565_1
HG04304
EX500842.1
DVC02798_1
AYC02742_1
GO239802.1
Acan_isotig01786
ACC02159_1
TSC03364_1
ACC22839_1
CR01012
CSC01501_1
EX912757.1
FE914360.1
BU088606.1
CJC00161_1
PPC05246_1
JI171396.1
JI172585.1
EX915184.1
ACC39163_1
JI171411.1
GR11139
CRC06175_1
PP00721
FC821898.1
EX007184.1
BMC11888_1
TMC01193_1
JI173733.1
FD515592.1
CK855102.1
EX559173.1
RS06000
ES273009.1
ES410417.1
EX012086.1
EX916697.1
Tcol_isotig04888
EX912534.1
ES740652.1
DA00820
BXC00841_1
SSC03785_1
EX551288.1
EX559018.1
HC01808
CB039008.1
WBC01525_1
ASC04611_1
DAC01190_1
GQ332406.1
SR03532
Acan_isotig10908
CRC11983_1
ACC22460_1
GE639170.1
AF344334.1
MH04477
ES565343.1
EX561039.1
CR01959
HGC11130_1
EX010763.1
ACC16640_1
PT04031
CBC01602_1
FG353879.1
AE04062
NAC02274_1
AF344333.1
ES413619.1
HCC06393_1
EX535671.1
HBC00356_1
EX544347.1
EX915317.1
JI179141.1
JI172198.1
NBC05656_1
Dviv_isotig34682
FC821284.1
MI02324
RSC02332_1
Oden_isotig06814
EY473781.1
ES744345.1
Dviv_isotig17744
AS01679
TM01517
Tcol_isotig04889
Name_isotig00750
AI132889.1
SRC04496_1
JO472292.1
Tcir_isotig06163
DA00821
EX563342.1
DN190787.1
GO251006.1
DN557374.1
HQ452945.1
ASC30531_1
MP02232
JI173186.1
Tcir_isotig07266
FD516827.1
MI08897
EX007359.1
PPC03374_1
EX910414.1
Dviv_isotig17745
HCC12589_1
XI00450
SS00262
CRC03510_1
BF918214.1
EY460631.1
AW330456.1
EX539576.1
CK726367.1
LSC00587_1
EY466820.1
MHC01920_1
Acan_isotig01784
Oden_isotig06815
CK850534.1
BU088565.1
AA293982.1
TV00156
AS08740
XIC03492_1
PTC04678_1
MJ00169
JI465198.1
DN557995.1
DA03476
PPC19646_1
ES413778.1
MPC01761_1
MJC00039_1
AI381150.1
JI167718.1
ACC13175_1
AAC00265_1
Experimental_infoExpr_patternExpr1066652
Microarray_resultsGPL8303_CB6_WBGene00039902_A
GPL8303_CB6_WBGene00039902_B
GPL14143_CBG21017_160-219_0.848_3_A
GPL14143_CBG21017_194-253_0.865_2_C
GPL14143_CBG21017_540-599_0.769_26_B
Expression_clusterWBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene