WormBase Tree Display for Gene: WBGene00098673

WBGene00098673 SMap: S_parent: Sequence: PPA_ChrI
  Identity: Version: 8
    Name: Sequence_name: PPA09119
      Molecular_name: PPA09119
        PPA09119.1
        PP07549
      Other_name: GENEPREDICTION_SNAP300000065622
        GENEPREDICTION_SNAP300000080336
        UMA-S71-12.29 Person_evidence: WBPerson606
      Public_name: PPA09119
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:04 WBPerson4055 Event: Imported: from NGASP
        2 24 Nov 2017 09:46:51 WBPerson4055 Event: Acquires_merge: WBGene00113013
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-act-2
        4 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Ppa-act-2
        6 27 Nov 2019 12:48:15 WBPerson1983 Name_change: CGC_name: Removed
        7 04 Feb 2020 15:43:56 WBPerson1983 Name_change: CGC_name: Ppa-act-2
        8 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
      Acquires_merge: WBGene00113013
    Status: Live
  Gene_info: Biotype: SO:0001217
    RNASeq_FPKM: WBls:0000032 16.9923 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 15.6987 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        16.9923 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        30.1039 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Ortholog (144)
    Paralog: WBGene00096809 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00099259 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00099729 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00103688 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00202780 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272225 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00273758 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00275837 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00276137 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00304882 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: ATPase, nucleotide binding domain; Actin; and Actin family. Is an ortholog of C. elegans act-2 and act-4. In C. elegans, act-2 is involved in several processes, including cortical actin cytoskeleton organization; cytoskeleton-dependent cytokinesis; and embryo development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA09119
    Corresponding_transcript: PPA09119.1
    Other_sequence: EL888013.1
      Acan_isotig00668
      FG974316.1
      Oden_isotig19833
      ES412150.1
      FG978366.1
      MIC05854_1
      EL889086.1
      AS01802
      EX013819.1
      FK800300.1
      CV200249.1
      FE910788.1
      MHC05809_1
      EL889183.1
      EX535298.1
      AS10453
      ACC05923_1
      CR02797
      Acan_isotig09259
      ES741138.1
      EX545188.1
      FG972795.1
      BXC03378_1
      HCC00334_1
      EX549901.1
      EX544188.1
      EL890610.1
      JI257306.1
      ASC00084_1
      HGC01330_1
      EL890042.1
      HC03258
      BMC01127_1
      JK315338.1
      EL889255.1
      Acan_isotig00666
      JO475345.1
      HGC01347_1
      AS00230
      PVC00122_2
      CV200469.1
      TLC00073_1
      BE720887.1
      HG08573
      ALC00497_3
      HGC00025_1
      EX536859.1
      ACC23448_1
      FG976481.1
      JO469240.1
      TCC01115_1
      JI226080.1
      JK314943.1
      JK315804.1
      FG352596.1
      JK315480.1
      NAC00601_1
      JI257001.1
      ES880287.1
      BG467912.1
      TLC00017_1
      HCC00199_3
      EL888092.1
      JI226620.1
      JK315156.1
      ACC40651_1
      EY471896.1
      BE238888.1
      ES880572.1
      XIC04073_1
      FG619706.1
      GO250024.1
      Hbac_isotig00346
      BXC03470_1
      MI04581
      ASC02230_1
      GPC01803_1
      TSC01065_1
      JK315443.1
      HC00548
      CRC02114_1
      AE03487
      JO468468.1
      CBC00193_3
      TLC00017_4
      MH02788
      PTC04399_1
      HG09664
      EX547740.1
      HG08407
      EX910228.1
      FF678108.1
      FG352332.1
      RS11100
      NB06613
      ZP00045
      Name_isotig09262
      TLC00017_2
      ES408725.1
      JK315148.1
      ASC00497_1
      AS01212
      AI130581.1
      ES880493.1
      JK314784.1
      FG973612.1
      HG08450
      HCC00199_6
      ASC33249_1
      Oden_isotig19782
      JI476856.1
      GRC02284_1
      EX536094.1
      MH06987
      CV198908.1
      AE00448
      AI130300.1
      CV200399.1
      MHC05768_1
      JO475642.1
      Dviv_isotig07273
      EX537783.1
      JO472452.1
      GR12215
      BU586052.1
      JK315642.1
      JO475734.1
      FK807322.1
      TS00914
      JK315999.1
      AF532605.1
      JO468695.1
      GO249908.1
      JO475272.1
      CV199919.1
      JI180655.1
      EX535748.1
      AS15406
      EX552246.1
      EX013053.1
      Tcir_isotig08538
      GO249196.1
      GR11872
      HG04253
      BM567632.1
      TX00990
      CV201078.1
      JI235061.1
      EX546904.1
      AYC01839_1
      CRC00044_3
      MAC02930_1
      GU130148.1
      GP00349
      EU100952.1
      GR11992
      HBC07640_1
      JI240314.1
      HG01094
      HGC04032_1
      TS03932
      ACC04946_1
      GR19558
      Oden_isotig14856
      EX537132.1
      PTC04100_1
      ASC02230_3
      XI01231
      JK315444.1
      ACC06030_1
      EX539783.1
      AS08532
      EX539705.1
      BXC01269_1
      ES880522.1
      CBC12545_1
      AYC00179_3
      ZPC00041_1
      XI05502
      HGC05734_1
      JI229776.1
      JO475812.1
      FE911216.1
      FG972838.1
      HGC03755_1
      CR00925
      ES880307.1
      FK804847.1
      EX537974.1
      EX911004.1
      BUC00152_1
      MC01192
      AYC01831_1
      HGC03725_1
      HBC01068_2
      XI02377
      JO475768.1
      CR04411
      ES569048.1
      EX537655.1
      JI625629.1
      JK314924.1
      MH06964
      FG972119.1
      EX910336.1
      Tcol_isotig16050
      MH02791
      EX911874.1
      HBC00466_1
      ASC04191_1
      EX547836.1
      MA00523
      AE03386
      Tcir_isotig10708
      BM567610.1
      AE00612
      EX536709.1
      Tcir_isotig30417
      EY192510.1
      FG619267.1
      FG980116.1
      HCC09206_1
      AA629437.1
      ES880291.1
      EL888177.1
      JI168888.1
      GRC04191_1
      Acan_isotig09096
      JK315692.1
      FG581324.1
      FG973619.1
      AS01841
      DN190297.1
      CGC00040_1
      HG03488
      GP01028
      HC00699
      GO250066.1
      BMC01273_1
      HGC08401_1
      Tcir_isotig23205
      GP00985
      MH02789
      JK315346.1
      GO249563.1
      EY468117.1
      AY372758.1
      HG11982
      ES880476.1
      GE637913.1
      MI05423
      ES740923.1
      FE907198.1
      EL889524.1
      BMC01680_1
      HGC11068_1
      FM207848.1
      AS10579
      GO249995.1
      ACC18675_1
      JK316003.1
      EX536492.1
      GE638203.1
      PT04885
      ASC01744_2
      JK315082.1
      AJ012665.1
      GP01019
      HG08029
      JI221509.1
      EX549854.1
      Dviv_isotig07272
      GP02452
      PVC01183_1
      CV198975.1
      EX545174.1
      BMC01680_2
      JO475854.1
      FG976031.1
      HG09268
      FG974697.1
      CV200964.1
      EX544081.1
      EX013770.1
      JI216031.1
      JK315427.1
      AS02335
      EL887721.1
      RSC03037_1
      FG971947.1
      JK315048.1
      FK806726.1
      ASC00847_1
      MH07009
      JK315971.1
      NB06531
      JK315818.1
      CV199765.1
      FG973063.1
      ES413131.1
      EX546836.1
      FG978003.1
      ES411073.1
      Oden_isotig20961
      PTC00500_4
      HC07885
      FK800995.1
      JO475758.1
      ES414349.1
      Hbac_isotig00347
      MH06883
      BU587031.1
      GR367757.1
      EX537675.1
      BU585862.1
      EX549346.1
      AYC02944_1
      JK314790.1
      EX550917.1
      EX537767.1
      FD517146.1
      BMC12318_1
      FG975865.1
      ZP00006
      EL888917.1
      FK803652.1
      PP00241
      FF680532.1
      JK315241.1
      EX910892.1
      Name_isotig04869
      ACC05919_1
      GRC04415_1
      EV851427.1
      EW743935.1
      CRC01799_1
      FG971097.1
      JO468499.1
      HBC18166_1
      MH09233
      FG978661.1
      FG582925.1
      PPC04471_1
      EX560345.1
      AS09883
      GRC01015_1
      Acan_isotig00667
      ES739807.1
      FE909671.1
      FE919787.1
      CBC07577_1
      XI05483
      JK314870.1
  Experimental_info: Microarray_results: GPL14372_Probes_49511
      GPL14372_Probes_49512
    Expression_cluster: WBPaper00041606:PP_S.marcescens_regulated
      WBPaper00041606:PP_X.nematophila_regulated
  Remark: [190208 pad] The CGC name Ppa-act-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [191127 pad] The CGC name Ppa-act-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Ppa-act-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene