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WormBase Tree Display for Gene: WBGene00106999

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Name Class

WBGene00106999SMapS_parentSequencePPA_ChrI
IdentityVersion6
NameCGC_namePpa-kars-1From_analysisInferred_from_orthology
Sequence_namePPA17445
Molecular_namePPA17445
PPA17445.1
PP57035
Other_nameGENEPREDICTION_SNAP300000074140
Ppa-krs-1From_analysisInferred_from_orthology
UMS-S139-20.50Person_evidenceWBPerson606
Public_namePpa-kars-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
229 Jan 2010 10:38:19WBPerson2970Name_changeCGC_namePpa-kars-1
Other_namePpa-krs-1
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:26WBPerson1983Name_changeCGC_namePpa-kars-1
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:29WBPerson1983Name_changeCGC_namePpa-kars-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classkars
RNASeq_FPKMWBls:000003271.8831From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:000010150.7296From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
71.8831From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
80.3058From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
GO_annotation00181066
00181067
00181068
00181069
00181070
00181071
00181072
00181073
Ortholog (31)
ParalogWBGene00090213Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00094728Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276427Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP binding activity; lysine-tRNA ligase activity; and nucleic acid binding activity. Predicted to be involved in lysyl-tRNA aminoacylation. Predicted to be located in cytoplasm. Is an ortholog of C. elegans kars-1. In C. elegans, kars-1 is involved in several processes, including determination of adult lifespan; positive regulation of nematode larval development; and regulation of brood size.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA17445
Corresponding_transcriptPPA17445.1
Other_sequencePP02278
Tcir_isotig29467
EY460112.1
EY461739.1
Acan_isotig03524
ACC17916_1
EW741478.1
DN190513.1
EX548819.1
Dviv_isotig04267
Dviv_isotig04262
ACC17433_1
ASC05344_1
AYC02754_1
EY461096.1
TIC00299_1
EY461722.1
Tcir_isotig21777
FG581213.1
AW735071.1
Dviv_isotig04269
Dviv_isotig04258
HBC09926_1
Dviv_isotig04271
EY460237.1
Dviv_isotig04256
AS13130
FE917810.1
CBC06334_1
EX552399.1
PTC04071_1
Dviv_isotig04253
CGC00701_1
EX910829.1
BXC03897_1
Acan_isotig02033
Dviv_isotig04261
FC813188.1
Tcol_isotig19464
AJ616425.1
FK800261.1
ACC15225_1
FC549308.1
RS06823
CBC00792_1
SSC06270_1
EX556436.1
CRC00152_1
EY473466.1
EW742592.1
MJ01698
EY466166.1
FC547599.1
FC553931.1
AS15182
Dviv_isotig04255
Tcol_isotig08402
EX539947.1
Hbac_isotig01165
EX541517.1
FG972525.1
Dviv_isotig04249
AS08140
BXC02973_1
FK800701.1
ACC39366_1
EY459377.1
ES672561.1
EY464842.1
FK808615.1
Dviv_isotig04260
EX545400.1
EX545263.1
EY469182.1
Dviv_isotig04254
AE02365
FC548437.1
EX550408.1
ES672449.1
Acan_isotig06078
FC542697.1
BU666407.1
FC553944.1
JI167954.1
Dviv_isotig04270
EX559730.1
NAC00810_1
BU088596.1
AAC00113_1
EX544136.1
FC547554.1
CR01566
EX565238.1
FC548725.1
Tcir_isotig07110
Dviv_isotig04265
BU089303.1
CK725678.1
EX555057.1
WBC03073_1
Acan_isotig02030
EX566852.1
FK806708.1
FE913798.1
ES671941.1
EY462379.1
Dviv_isotig04250
RSC03354_1
Dviv_isotig04248
Tcol_isotig08403
Tcir_isotig19555
FK807901.1
BI773044.1
ACC23114_1
EY460834.1
Dviv_isotig04264
Acan_isotig06079
TSC09369_1
ACC00205_1
SRC04727_1
CJC08977_1
EV853706.1
JI459398.1
JO470058.1
ACC00205_2
BI773149.1
CR02356
ACC17549_1
BU666670.1
Dviv_isotig04252
PT00410
Name_isotig01176
Dviv_isotig04257
HBC04280_1
EY465665.1
DVC02406_1
Acan_isotig02032
OOC00870_1
Oden_isotig18915
Dviv_isotig04259
AS00930
EY472878.1
EX555932.1
PPC04299_1
JI168408.1
AE00158
SR03144
Dviv_isotig04268
FF678628.1
FK801661.1
BU666056.1
ES566256.1
Dviv_isotig04263
Acan_isotig02031
FE917265.1
Dviv_isotig04251
FC818944.1
FF678950.1
FE918316.1
EX541302.1
Tcol_isotig08404
Dviv_isotig04266
PPC01385_1
MJC00642_1
AYC01166_1
FK804437.1
Remark[190208 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-kars-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene