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WormBase Tree Display for Gene: WBGene00108312

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Name Class

WBGene00108312SMapS_parentSequencePPA_ChrX
IdentityVersion2
NameCGC_namePpa-rund-1From_analysisInferred_from_orthology
Sequence_namePPA18758
Molecular_namePPA18758
PPA18758.1
PP54108
Other_nameGENEPREDICTION_SNAP300000075572
UMM-S293-4.37Person_evidenceWBPerson606
Public_namePpa-rund-1
SpeciesPristionchus pacificus
HistoryVersion_change106 Aug 2008 09:05:05WBPerson4055EventImportedfrom NGASP
228 Apr 2014 09:34:47WBPerson2970Name_changeCGC_namePpa-rund-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrund
RNASeq_FPKMWBls:00000327.66965From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001012.26448From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
3.31138From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
Ortholog (23)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: RUN domain superfamily and RUN domain. Is an ortholog of C. elegans rund-1. In C. elegans, rund-1 is involved in several processes, including dense core granule maturation; positive regulation of behavior; and regulation of transport.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA18758
Corresponding_transcriptPPA18758.1
Other_sequenceFC539459.1
EX553222.1
EY465169.1
Acan_isotig06116
Tcol_isotig17474
Name_isotig06957
Dviv_isotig17043
ES410033.1
ACC09689_1
Oden_isotig22099
AI130445.1
EY471015.1
EX563591.1
JI471673.1
JI477068.1
HBC03223_1
EX562540.1
Oden_isotig21161
EY459807.1
Dviv_isotig17042
Tcir_isotig08280
EY469546.1
JI170541.1
ACC23555_1
Tcol_isotig14397
OVC01772_1
EX554548.1
JI466268.1
ACC24805_1
JI484194.1
Acan_isotig06117
Experimental_infoMicroarray_resultsGPL14372_Probes_75538
GPL14372_Probes_75539
GPL14372_Probes_75541
GPL14372_Probes_75542
GPL14372_Probes_75544
MethodGene