WormBase Tree Display for Gene: WBGene00135973

WBGene00135973 SMap: S_parent: Sequence: Cjap.Contig17556
  Identity: Version: 2
    Name: CGC_name: Cjp-col-68 From_analysis: Inferred_from_orthology
      Sequence_name: CJA16769
      Molecular_name: CJA16769
        CJA16769.1
        JA04150
      Public_name: Cjp-col-68
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-col-68
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: col
    RNASeq_FPKM: WBls:0000004 11.084 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 2.29882 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 4.61362 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        5.70688 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        6.80014 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 10.7357 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        3.46176 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        3.68622 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        4.24724 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        4.30643 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        4.86682 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        5.4272 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        5.46894 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        5.54677 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        7.04065 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
      WBls:0000101 4.61362 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        5.32083 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00199994
    Ortholog (23)
    Paralog (69)
    Structured_description: Automated_description: Predicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-68. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA16769
    Corresponding_transcript: CJA16769.1
    Other_sequence: AA294514.1
      EX007131.1
      TDC02343_1
      HCC00239_1
      AS04344
      BG809074.1
      AM744462.1
      AA618790.1
      AW980194.1
      JI220903.1
      AA618942.1
      AA756878.1
      TMC00862_1
      AA618931.1
      AS02559
      ES412839.1
      CK855137.1
      ASC00940_1
      LSC01809_1
      EU370160.1
      JO473049.1
      CK850529.1
      BMC08961_1
      CN007728.1
      MA01415
      AI111198.1
      DN190896.1
      HG07437
      AE04714
      ASC00165_1
      TX00423
      Tcol_isotig22311
      MCC03411_1
      OOC00199_1
      JI175468.1
      DN190271.1
      AW453448.1
      CK726354.1
      HGC04571_1
      Dviv_isotig25155
      EX012708.1
      EX540118.1
      EX007278.1
      CJC18179_1
      MH06163
      GP02846
      AI111219.1
      AW453451.1
      TDC02529_1
      BF727632.1
      BG734308.1
      ES743028.1
      EX549428.1
      MAC00720_1
      JI180185.1
      JI241857.1
      BF482066.1
      JO467731.1
      ASC00165_2
      BMC06846_1
      HC02325
      AW355745.1
      AS04218
      Dviv_isotig23768
      CK726314.1
      WBC00006_1
      HG01992
      AA668048.1
      FG977183.1
      ES741012.1
      AM744905.1
      Tcir_isotig10041
      EX013570.1
      DN190687.1
      ACC05920_1
      PT02814
      FG980743.1
      HBC15399_1
      HGC09341_1
      CK854633.1
      ES413431.1
      CK726019.1
      Tcir_isotig09090
      DN191089.1
      Tcol_isotig19568
      CB013608.1
      MHC11823_1
      TX01340
      AI322061.1
      GO240167.1
  Experimental_info: Expr_pattern: Expr1071765
    Microarray_results: GPL14145_CJA16769_262-321_0.728_18_B
      GPL14145_CJA16769_3-62_0.548_65_C
      GPL14145_CJA16769_612-671_0.594_51_A
  Method: Gene