WormBase Tree Display for Gene: WBGene00139135

WBGene00139135 SMap: S_parent: Sequence: Cbre_Contig14
  Identity: Version: 2
    Name: CGC_name: Cbn-oatr-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00410
      Molecular_name: CBN00410
        CBN00410.1
        CN17528
      Public_name: Cbn-oatr-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 01 Oct 2008 13:29:50 WBPerson4055 Event: Imported: from NGASP
        2 10 Aug 2016 09:48:21 WBPerson2970 Name_change: CGC_name: Cbn-oatr-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: oatr
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 15.0482 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        7.5241 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
      WBls:0000024 143.53 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        148.775 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
        37.674 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        38.2289 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        53.3905 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
      WBls:0000038 172.437 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        188.368 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        204.3 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (17)
      WBls:0000101 82.9888 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
        89.3752 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
    GO_annotation: 00202479
      00202480
      00202481
    Ortholog (39)
    Paralog: WBGene00146762 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00149585 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00159743 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00175048 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00190364 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable ornithine-oxo-acid transaminase activity and pyridoxal phosphate binding activity. Is an ortholog of C. elegans oatr-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00410
    Corresponding_transcript: CBN00410.1
    Other_sequence: CBC03508_1
      HGC03048_1
      JI168053.1
      Tcir_isotig00921
      EY461401.1
      AE04481
      Tcir_isotig26195
      CGC00529_1
      Name_isotig06686
      EW744664.1
      EX563520.1
      Tcir_isotig00922
      ES567719.1
      Tcir_isotig10596
      CJC04590_1
      Oden_isotig19546
      EX534738.1
      EY462421.1
      AYC02955_1
      FC543903.1
      EX536399.1
      Tcir_isotig00924
      EY460146.1
      FC550404.1
      DAC01175_1
      FC549973.1
      EX554472.1
      Tcir_isotig00923
      AE04853
      EG025670.1
      EX828364.1
      Hbac_isotig01250
      CGC01195_1
      EY470675.1
      Tcir_isotig10172
      BMC05946_1
      EY470617.1
      EX535419.1
      Dviv_isotig17621
      Tcol_isotig04895
      CJC01908_1
      SR01801
      HG07660
      Name_isotig01345
      ES409717.1
      EX549611.1
      GO252799.1
      FK806315.1
      AE03658
      FC548695.1
      FG978952.1
      Tcir_isotig16869
      Dviv_isotig17620
      FC544393.1
      EY461323.1
      ES568779.1
      ES744244.1
      ACC00498_1
      BUC00923_1
      HBC06199_1
      Tcir_isotig24645
      EX500744.1
      EX538389.1
      EX011546.1
      TSC12326_1
      GE625894.1
      FC551519.1
      Tcol_isotig04894
      JI482526.1
      EX828079.1
      DA02869
      FG619233.1
      Acan_isotig08845
      HBC07047_1
      FC545630.1
      ACC34718_1
      FC542601.1
      SRC03460_1
      Tcol_isotig04893
      EX007301.1
      TSC10485_1
      HBC01252_1
      EX554220.1
      Tcir_isotig28592
  Experimental_info: Microarray_results: GPL14142_CBN00410_1011-1070_0.914_12_C
      GPL14142_CBN00410_1134-1193_0.953_2_A
      GPL14142_CBN00410_1194-1253_0.956_1_B
  Method: Gene