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WormBase Tree Display for Gene: WBGene00157136

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Name Class

WBGene00157136SMapS_parentSequenceCbre_Contig146
IdentityVersion1
NameCGC_nameCbn-ccf-1From_analysisInferred_from_orthology
Sequence_nameCBN18411
Molecular_nameCBN18411
CBN18411.1
CN01418
Other_nameCBN18411
Public_nameCbn-ccf-1
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-ccf-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classccf
RNASeq_FPKMWBls:0000002 (11)
WBls:0000004140.696From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
70.348From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
WBls:00000240From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
36.7322From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
38.2252From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
42.014From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
43.2486From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
48.693From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
WBls:000003852.2209From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
53.3904From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
54.56From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (17)
WBls:000010139.549From_analysisRNASeq.brenneri.total_over_all_stages.control_median
47.8006From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00217049
00217050
00217051
Ortholog (46)
Structured_descriptionAutomated_descriptionPredicted to enable nucleic acid binding activity and poly(A)-specific ribonuclease activity. Predicted to be part of CCR4-NOT complex. Is an ortholog of C. elegans ccf-1. In C. elegans, ccf-1 is involved in nuclear-transcribed mRNA poly(A) tail shortening and oogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN18411
Corresponding_transcriptCBN18411.1
Other_sequenceCBC06053_1
CBC10044_1
CRC10664_1
HG01276
SR04450
OVC03764_1
Oden_isotig13656
CK850694.1
Hbac_isotig03937
EX558646.1
CR09994
EL888752.1
JI164790.1
CR07886
ES570123.1
PPC05065_1
HG00481
ES408534.1
SRC05799_1
Tcol_isotig08862
MC00505
Oden_isotig13655
Acan_isotig02190
Acan_isotig02188
Tcol_isotig08863
DI01700
Acan_isotig09485
JI463273.1
ACC02641_1
HBC06911_1
Tcir_isotig21590
Dviv_isotig15072
Acan_isotig17047
JO468186.1
AW244873.1
ES408800.1
HBC21184_1
EX541212.1
PP00243
Name_isotig01272
EX563106.1
CJC08106_1
TSC07535_1
MCC04670_1
HGC05110_1
CRC10685_1
PVC02405_1
ACC11715_1
BMC02330_1
WBC02001_1
FC819413.1
FC813558.1
FG619694.1
EX501543.1
Tcir_isotig13852
BMC02942_1
Experimental_infoMicroarray_resultsGPL14142_CBN18411_529-588_0.938_7_B
GPL14142_CBN18411_608-667_0.952_2_A
GPL14142_CBN18411_712-771_0.949_3_C
MethodGene