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WormBase Tree Display for Gene: WBGene00142355

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Name Class

WBGene00142355SMapS_parentSequenceCbre_Contig5
IdentityVersion1
NameCGC_nameCbn-col-89From_analysisInferred_from_orthology
Sequence_nameCBN03630
Molecular_nameCBN03630
CBN03630.1
CN19308
Other_nameCBN03630
Public_nameCbn-col-89
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-col-89
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcol
RNASeq_FPKMWBls:0000002 (11)
WBls:00000040From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
3.77689From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
7.55377From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:000002410.6043From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
12.1621From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
12.287From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
26.4054From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
9.55019From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
WBls:000003871.4786From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
74.5862From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
77.6938From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (18)
WBls:000010122.0168From_analysisRNASeq.brenneri.total_over_all_stages.control_median
24.8639From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
GO_annotation00205080
Ortholog (29)
ParalogWBGene00141083Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00142175Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00142341Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163006Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160526Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00161985Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143088Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00148222Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00159676Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00144776Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00158904Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00146325Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00160811Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00146298Caenorhabditis brenneriFrom_analysisTreeFam
GeneACeDB-Compara
WBGene00143229Caenorhabditis brenneriFrom_analysisTreeFam
GeneACeDB-Compara
WBGene00146964Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00164354Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00153323Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
GeneACeDB-Compara
WBGene00159318Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00152723Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00146011Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00162767Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00143222Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00155097Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00153505Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00145063Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00161742Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00154300Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00159186Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00163723Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00161979Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00162492Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00156285Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00190994Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00192264Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00156359Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194356Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00159517Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00163988Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00143641Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00193417Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00190111Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00148653Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00139734Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00139964Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00141521Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00145057Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00151301Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00153945Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00162583Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00147187Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00192942Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
WBGene00193258Caenorhabditis brenneriFrom_analysisGeneACeDB-Compara
Structured_descriptionAutomated_descriptionPredicted to be a structural constituent of cuticle. Is an ortholog of C. elegans col-89. In C. elegans, col-89 is involved in IRE1-mediated unfolded protein response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN03630
Corresponding_transcriptCBN03630.1
Other_sequence (256)
Experimental_infoMicroarray_resultsGPL14142_CBN03630_241-300_0.909_12_C
GPL14142_CBN03630_381-440_0.939_2_B
GPL14142_CBN03630_616-675_0.944_1_A
MethodGene