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WormBase Tree Display for Gene: WBGene00225751

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Name Class

WBGene00225751SMapS_parentSequenceBm_v4_Chr3_scaffold_001
IdentityVersion4
NameCGC_nameBma-serr-1From_analysisInferred_from_orthology
Sequence_nameBm5490
Molecular_nameBm5490
Bm5490.1
BM41765
Other_nameTAG5490Curator_confirmedWBPerson4055
Bm1_24445ACurator_confirmedWBPerson4055
Bm1_24445Person_evidenceWBPerson5841
Public_nameBma-serr-1
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:25WBPerson4055EventCreated
204 Jun 2020 14:38:21WBPerson1983Name_changeCGC_nameBma-serr-1
328 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
428 Jul 2021 11:12:29WBPerson1983Name_changeCGC_nameBma-serr-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classserr
RNASeq_FPKMWBls:00000977.39927From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
14.6727From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
15.2071From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
15.2525From_analysisRNASeq.brugia.WBls:0000097.control_median
15.2979From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
17.0705From_analysisRNASeq.brugia.WBls:0000097.control_mean
22.702From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
27.8589From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
6.68432From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:00000783.56953From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
3.97046From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
4.2751From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
4.31248From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
6.06558From_analysisRNASeq.brugia.WBls:0000078.control_mean
8.08679From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
8.71127From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
9.53343From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
WBls:00000807.90642From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
8.51441From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
8.70086From_analysisRNASeq.brugia.WBls:0000080.control_median
8.78364From_analysisRNASeq.brugia.WBls:0000080.control_mean
8.88732From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
9.8264From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (23)
WBls:00000824.22332From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
4.31785From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
5.63009From_analysisRNASeq.brugia.WBls:0000082.control_mean
5.77447From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
6.74715From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
7.08765From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (82)
WBls:000009210.9302From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
11.5831From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
12.236From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009410.0686From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
11.757From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
13.4455From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00001017.47552From_analysisRNASeq.brugia.total_over_all_stages.control_median
7.60599From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:000066211.153From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
16.345From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
5.961From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:000066313.7666From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Ortholog (37)
ParalogWBGene00224592Brugia malayiFrom_analysisWormBase-Compara
WBGene00226264Brugia malayiFrom_analysisWormBase-Compara
WBGene00269175Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Tryptophan synthase beta subunit-like PLP-dependent enzyme and Pyridoxal-phosphate dependent enzyme. Is an ortholog of C. elegans serr-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm5490
Corresponding_transcriptBm5490.1
Other_sequence (25)
Experimental_infoExpression_clusterWBPaper00051007:downregulated_F120_vs_F30
WBPaper00061765:Adult_vs_Micro_Upregulated
WBPaper00061765:L4_vs_Micro_Upregulated
ReferenceWBPaper00045439
Remark[210528 pad] The CGC name Bma-serr-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene