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WormBase Tree Display for Gene: WBGene00227431

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Name Class

WBGene00227431SMapS_parentSequenceBm_v4_Chr3_scaffold_001
IdentityVersion6
NameCGC_nameBma-atg-4.1From_analysisInferred_from_orthology
Sequence_nameBm7170
Molecular_nameBm7170
Bm7170.1
BM33296
Other_nameBm-atg-4.1
TAG7170Curator_confirmedWBPerson4055
Bm1_03885ACurator_confirmedWBPerson4055
Bm1_03885Person_evidenceWBPerson5841
Public_nameBma-atg-4.1
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:25WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-atg-4.1
Other_nameBm-atg-4.1
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:23WBPerson1983Name_changeCGC_nameBma-atg-4.1
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameBma-atg-4.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatg
RNASeq_FPKMWBls:000009722.2464From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
17.1702From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
21.4922From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
22.7762From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
23.4518From_analysisRNASeq.brugia.WBls:0000097.control_mean
23.9771From_analysisRNASeq.brugia.WBls:0000097.control_median
25.178From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
26.7174From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
27.3767From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
WBls:000007812.1326From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
14.5473From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
17.3676From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
18.4121From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
20.9635From_analysisRNASeq.brugia.WBls:0000078.control_mean
24.9562From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
29.6507From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
29.6782From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
WBls:000008023.2065From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
27.5204From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
28.0441From_analysisRNASeq.brugia.WBls:0000080.control_mean
28.9436From_analysisRNASeq.brugia.WBls:0000080.control_median
30.3667From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
31.0828From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
WBls:0000081 (24)
WBls:000008224.182From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
24.1998From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
24.6722From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
26.4512From_analysisRNASeq.brugia.WBls:0000082.control_mean
29.1146From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
30.0874From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (82)
WBls:000009239.0182From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
39.5101From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
40.002From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009432.7523From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
33.3541From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
33.956From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:000010124.1821From_analysisRNASeq.brugia.total_over_all_stages.control_mean
25.3979From_analysisRNASeq.brugia.total_over_all_stages.control_median
WBls:000066226.1829From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
28.2784From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
30.3738From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:000066320.2005From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
GO_annotation00246118
Ortholog (32)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Peptidase C54; Peptidase family C54; and Papain-like cysteine peptidase superfamily. Is an ortholog of C. elegans atg-4.1. In C. elegans, atg-4.1 is involved in aggrephagy and protein processing.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm7170
Corresponding_transcriptBm7170.1
Other_sequence (36)
Experimental_infoExpression_clusterWBPaper00051007:downregulated_F120_vs_F30
WBPaper00051007:downregulated_M120_vs_M30
WBPaper00061765:L4_vs_Adult_Downregulated
ReferenceWBPaper00045439
Remark[190208 pad] The CGC name Bma-atg-4.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-atg-4.1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene