WormBase Tree Display for Gene: WBGene00000164
expand all nodes | collapse all nodes | view schema
| WBGene00000164 | SMap | S_parent | Sequence | F53H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | apm-3 | Person_evidence | WBPerson360 | |||||
| WBPerson567 | |||||||||
| Sequence_name | F53H8.1 | ||||||||
| Molecular_name | F53H8.1 | ||||||||
| F53H8.1.1 | |||||||||
| CE35723 | |||||||||
| Other_name | apt-7 | Person_evidence | WBPerson625 | ||||||
| CELE_F53H8.1 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | apm-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | apm-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | apm | ||||||||
| Allele (34) | |||||||||
| Strain | WBStrain00003476 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Contained_in_operon | CEOPX012 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000150 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001082 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006777 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006829 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | apm-3 encodes an adaptin, orthologous to the mu3 subunit of adaptor protein complex 3 (AP-3); APM-3 is also orthologous to human HPS, which when mutated leads to Hermansky-Pudlak syndrome (OMIM:203300); based on structural similarity, APM-3 is predicted to be involved in the formation of intracellular transport vesicles, and genetic analyses indicate that apm-3 activity is required for biogenesis of lysosome-related gut granules. | Paper_evidence | WBPaper00004103 | |||||
| WBPaper00004907 | |||||||||
| WBPaper00005520 | |||||||||
| WBPaper00013041 | |||||||||
| WBPaper00025094 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson324 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 23 Jan 2007 00:00:00 | ||||||||
| Automated_description | Involved in lipid storage and lysosome organization. Predicted to be located in cytoplasmic vesicle. Predicted to be part of clathrin adaptor complex. Expressed in muscle cell; pharynx; spermatheca; and vulva. Is an ortholog of human AP3M1 (adaptor related protein complex 3 subunit mu 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53H8.1 | |||||||
| Corresponding_CDS_history | F53H8.1:wp108 | ||||||||
| Corresponding_transcript | F53H8.1.1 | ||||||||
| Other_sequence (63) | |||||||||
| Associated_feature | WBsf647808 | ||||||||
| WBsf662451 | |||||||||
| WBsf1003904 | |||||||||
| WBsf1022191 | |||||||||
| WBsf235299 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr3688 | ||||||||
| Expr6161 | |||||||||
| Expr12910 | |||||||||
| Expr1024542 | |||||||||
| Expr1030093 | |||||||||
| Expr1152010 | |||||||||
| Expr2009362 | |||||||||
| Expr2027598 | |||||||||
| Drives_construct | WBCnstr00003937 | ||||||||
| WBCnstr00011600 | |||||||||
| WBCnstr00037694 | |||||||||
| Construct_product | WBCnstr00022947 | ||||||||
| WBCnstr00023054 | |||||||||
| WBCnstr00037694 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | X | Position | -18.8908 | Error | 0.004786 | |||
| Positive | Positive_clone | F53H8 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4163 | |||||||
| 4512 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004907 | ||||||||
| WBPaper00005520 | |||||||||
| WBPaper00025094 | |||||||||
| WBPaper00025719 | |||||||||
| WBPaper00026639 | |||||||||
| WBPaper00028448 | |||||||||
| WBPaper00028970 | |||||||||
| WBPaper00029101 | |||||||||
| WBPaper00030940 | |||||||||
| WBPaper00031119 | |||||||||
| WBPaper00032168 | |||||||||
| WBPaper00036306 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049556 | |||||||||
| WBPaper00053743 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062416 | |||||||||
| WBPaper00062625 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
