WormBase Tree Display for Gene: WBGene00003267
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| WBGene00003267 | Evidence | Paper_evidence | WBPaper00004927 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y62F5A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | mir-39 | Person_evidence | WBPerson18 | |||||
| Sequence_name | Y62F5A.6 | ||||||||
| Molecular_name | Y62F5A.6 | ||||||||
| Y62F5A.6a | |||||||||
| Y62F5A.6b | |||||||||
| Other_name | cel-mir-39 | Remark | miRBase V21 import | ||||||
| Cel-Mir-36-P5 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_Y62F5A.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | mir-39 | ||||||||
| DB_info | Database | miRBase | acc | MI0000010 | |||||
| SignaLink | mirna | cel-mir-39 | |||||||
| MirGeneDB | cel | Cel-Mir-36-P5 | |||||||
| NDB | locus_tag | CELE_Y62F5A.6 | |||||||
| NCBI | gene | 266867 | |||||||
| RefSeq | protein | NR_000925.2 | |||||||
| RNAcentral | URSid | URS000016D303 | |||||||
| URS0000445DF7 | |||||||||
| URS00005D4EC7 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:31 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499702 | ||||||||
| WBVar01498604 | |||||||||
| WBVar01498613 | |||||||||
| WBVar01498435 | |||||||||
| WBVar00145669 | |||||||||
| WBVar00323158 | |||||||||
| WBVar01498941 | |||||||||
| In_cluster | MIR-36 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-39 encodes a microRNA, a small non-protein codong RNA; mir-39 has a potential C. briggsae ortholog; mir-39 is part of the mir-35-mir-41 cluster of miRNAs and functions redundantly with other members of this cluster to control embryonic development; mir-39 is highly expressed in the embryo and in young adults with eggs, but not at other developmental stages. | Paper_evidence | WBPaper00004927 | |||||
| WBPaper00010853 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 07 Feb 2005 00:00:00 | ||||||||
| Automated_description | Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | Y62F5A.6 | |||||||
| Y62F5A.6a | |||||||||
| Y62F5A.6b | |||||||||
| Other_sequence | AJ487564 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00021224 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1657 | ||||||||
| Expr2534 | |||||||||
| Expr10901 | |||||||||
| Expression_cluster (32) | |||||||||
| Interaction | WBInteraction000520823 | ||||||||
| WBInteraction000525414 | |||||||||
| WBInteraction000541193 | |||||||||
| WBInteraction000541255 | |||||||||
| WBInteraction000541256 | |||||||||
| WBInteraction000541258 | |||||||||
| WBInteraction000541259 | |||||||||
| WBInteraction000542240 | |||||||||
| WBInteraction000550021 | |||||||||
| WBInteraction000504912 | |||||||||
| Map_info | Map | II | Position | 3.7001 | Error | 0.008008 | |||
| Positive | Inside_rearr | nDf50 | |||||||
| Positive_clone | Y62F5A | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Pos_neg_data | 10918 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004927 | ||||||||
| WBPaper00005825 | |||||||||
| WBPaper00024441 | |||||||||
| WBPaper00031335 | |||||||||
| WBPaper00035664 | |||||||||
| WBPaper00040876 | |||||||||
| WBPaper00043989 | |||||||||
| WBPaper00045070 | |||||||||
| WBPaper00045503 | |||||||||
| WBPaper00057060 | |||||||||
| WBPaper00057263 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
