WormBase Tree Display for Gene: WBGene00020317
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| WBGene00020317 | SMap | S_parent | Sequence | T07E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | pdf-1 | Paper_evidence | WBPaper00031656 | |||||
| Person_evidence | WBPerson3516 | ||||||||
| WBPerson3480 | |||||||||
| Sequence_name | T07E3.6 | ||||||||
| Molecular_name | T07E3.6a | ||||||||
| T07E3.6a.1 | |||||||||
| CE52388 | |||||||||
| T07E3.6b | |||||||||
| CE52158 | |||||||||
| T07E3.6a.2 | |||||||||
| T07E3.6b.1 | |||||||||
| Other_name | nlp-74 | ||||||||
| CELE_T07E3.6 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | pdf-1 | ||||||||
| DB_info | Database | AceView | gene | 3I0 | |||||
| WormQTL | gene | WBGene00020317 | |||||||
| WormFlux | gene | WBGene00020317 | |||||||
| NDB | locus_tag | CELE_T07E3.6 | |||||||
| NCBI | gene | 175963 | |||||||
| RefSeq | protein | NM_001392134.1 | |||||||
| NM_171878.7 | |||||||||
| SwissProt | UniProtAcc | G8JYC6 | |||||||
| TREEFAM | TREEFAM_ID | TF321008 | |||||||
| UniProt_GCRP | UniProtAcc | G8JYC6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Apr 2008 13:26:44 | WBPerson2970 | Name_change | CGC_name | pdf-1 | ||||
| 3 | 13 Nov 2017 15:54:28 | WBPerson1983 | Name_change | Other_name | nlp-74 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | |||||||||
| Allele (49) | |||||||||
| Strain | WBStrain00026308 | ||||||||
| WBStrain00026321 | |||||||||
| WBStrain00031072 | |||||||||
| WBStrain00055110 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (21) | |||||||||
| Structured_description | Automated_description | Involved in several processes, including locomotory behavior; parturition; and positive regulation of protein secretion. Predicted to be located in extracellular region. Expressed in neurons and rectum. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07E3.6a | |||||||
| T07E3.6b | |||||||||
| Corresponding_CDS_history | T07E3.6a:wp261 | ||||||||
| T07E3.6b:wp261 | |||||||||
| Corresponding_transcript | T07E3.6a.1 | ||||||||
| T07E3.6a.2 | |||||||||
| T07E3.6b.1 | |||||||||
| Other_sequence (69) | |||||||||
| Associated_feature | WBsf667023 | ||||||||
| WBsf992896 | |||||||||
| WBsf992897 | |||||||||
| WBsf992898 | |||||||||
| WBsf1015170 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035310 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006788 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052767 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9958 | ||||||||
| Expr11002 | |||||||||
| Expr12483 | |||||||||
| Expr15402 | |||||||||
| Expr1024802 | |||||||||
| Expr1156375 | |||||||||
| Expr1200318 | |||||||||
| Expr2014800 | |||||||||
| Expr2033034 | |||||||||
| Drives_construct | WBCnstr00004986 | ||||||||
| WBCnstr00014967 | |||||||||
| WBCnstr00015835 | |||||||||
| WBCnstr00017683 | |||||||||
| WBCnstr00018027 | |||||||||
| WBCnstr00018339 | |||||||||
| WBCnstr00021689 | |||||||||
| WBCnstr00025226 | |||||||||
| Construct_product (11) | |||||||||
| Regulate_expr_cluster | WBPaper00040193:pdf-1(tm1996)_downregulated | ||||||||
| WBPaper00040193:pdf-1(tm1996)_upregulated | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (229) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | III | Position | -0.901914 | Error | 0.002146 | |||
| Positive | Positive_clone | T07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031656 | ||||||||
| WBPaper00034125 | |||||||||
| WBPaper00034493 | |||||||||
| WBPaper00035124 | |||||||||
| WBPaper00035339 | |||||||||
| WBPaper00035341 | |||||||||
| WBPaper00039422 | |||||||||
| WBPaper00040193 | |||||||||
| WBPaper00040444 | |||||||||
| WBPaper00041096 | |||||||||
| WBPaper00041718 | |||||||||
| WBPaper00042479 | |||||||||
| WBPaper00043343 | |||||||||
| WBPaper00044094 | |||||||||
| WBPaper00047014 | |||||||||
| WBPaper00047452 | |||||||||
| WBPaper00047675 | |||||||||
| WBPaper00047797 | |||||||||
| WBPaper00048673 | |||||||||
| WBPaper00050063 | |||||||||
| WBPaper00052564 | |||||||||
| WBPaper00054889 | |||||||||
| WBPaper00057039 | |||||||||
| WBPaper00061871 | |||||||||
| WBPaper00062132 | |||||||||
| WBPaper00063490 | |||||||||
| WBPaper00063630 | |||||||||
| WBPaper00063827 | |||||||||
| WBPaper00063837 | |||||||||
| WBPaper00063859 | |||||||||
| WBPaper00065376 | |||||||||
| WBPaper00065946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
