WormBase Tree Display for Gene: WBGene00020689
expand all nodes | collapse all nodes | view schema
| WBGene00020689 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | npr-12 | Paper_evidence | WBPaper00033064 | |||||
| Person_evidence | WBPerson42 | ||||||||
| WBPerson11490 | |||||||||
| Sequence_name | T22D1.12 | ||||||||
| Molecular_name | T22D1.12a | ||||||||
| T22D1.12a.1 | |||||||||
| CE17256 | |||||||||
| T22D1.12b | |||||||||
| CE49348 | |||||||||
| T22D1.12b.1 | |||||||||
| Other_name | npfr-2 | Person_evidence | WBPerson11490 | ||||||
| CELE_T22D1.12 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | npr-12 | ||||||||
| DB_info | Database | AceView | gene | 4H694 | |||||
| WormQTL | gene | WBGene00020689 | |||||||
| WormFlux | gene | WBGene00020689 | |||||||
| NDB | locus_tag | CELE_T22D1.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020689|UniProtKB=V6CLI1 | |||||||
| family | PTHR24235 | ||||||||
| NCBI | gene | 188742 | |||||||
| RefSeq | protein | NM_068670.2 | |||||||
| NM_001306803.3 | |||||||||
| TrEMBL | UniProtAcc | Q9GZG8 | |||||||
| V6CLI1 | |||||||||
| UniProt_GCRP | UniProtAcc | V6CLI1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 May 2009 14:29:51 | WBPerson9133 | Name_change | CGC_name | npr-12 | ||||
| 3 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | npr-12 | ||||
| Other_name | npfr-2 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npr | ||||||||
| Allele (94) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00093099 | ||||||||
| 00093100 | |||||||||
| 00093101 | |||||||||
| 00093102 | |||||||||
| 00093103 | |||||||||
| 00093104 | |||||||||
| 00125259 | |||||||||
| 00125260 | |||||||||
| 00125261 | |||||||||
| 00125262 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00003807 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00003808 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00016110 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016984 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021983 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| Structured_description | Automated_description | Predicted to enable neuropeptide Y receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to be located in membrane. Expressed in FLPL; FLPR; PVDL; and PVDR. Human ortholog(s) of this gene implicated in peripheral artery disease and temporal lobe epilepsy. Is an ortholog of human NPY1R (neuropeptide Y receptor Y1); NPY4R (neuropeptide Y receptor Y4); and NPY4R2 (neuropeptide Y receptor Y4-2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3328 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7956) | ||||
| DOID:0050830 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:7956) | ||||||
| Molecular_info | Corresponding_CDS | T22D1.12a | |||||||
| T22D1.12b | |||||||||
| Corresponding_transcript | T22D1.12a.1 | ||||||||
| T22D1.12b.1 | |||||||||
| Other_sequence | CJC02290_1 | ||||||||
| Dviv_isotig23890 | |||||||||
| BXC04084_1 | |||||||||
| JI181608.1 | |||||||||
| HBC00450_1 | |||||||||
| JI220695.1 | |||||||||
| Associated_feature | WBsf996851 | ||||||||
| WBsf1017633 | |||||||||
| WBsf230200 | |||||||||
| WBsf230201 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00053825 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035808 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00072227 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13698 | ||||||||
| Expr1019143 | |||||||||
| Expr1157372 | |||||||||
| Expr2014397 | |||||||||
| Expr2032638 | |||||||||
| Drives_construct | WBCnstr00039945 | ||||||||
| WBCnstr00039946 | |||||||||
| Construct_product | WBCnstr00039946 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction | WBInteraction000030016 | ||||||||
| WBInteraction000031505 | |||||||||
| WBInteraction000032310 | |||||||||
| WBInteraction000032412 | |||||||||
| WBInteraction000384550 | |||||||||
| WBInteraction000392181 | |||||||||
| WBInteraction000408358 | |||||||||
| WBInteraction000505772 | |||||||||
| WBInteraction000505774 | |||||||||
| WBInteraction000511495 | |||||||||
| Map_info | Map | IV | Position | 3.25034 | Error | 0.000379 | |||
| Positive | Positive_clone | T22D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027520 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00043908 | |||||||||
| WBPaper00053516 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060703 | |||||||||
| WBPaper00061107 | |||||||||
| WBPaper00061251 | |||||||||
| WBPaper00062894 | |||||||||
| WBPaper00064746 | |||||||||
| WBPaper00065946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
