WormBase Tree Display for Gene: WBGene00000003
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| WBGene00000003 | Evidence | Author_evidence | Veljkovic E | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Verrey F | |||||||||
| SMap | S_parent | Sequence | F07C3 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | aat-2 | |||||||
| Sequence_name | F07C3.7 | ||||||||
| Molecular_name | F07C3.7 | ||||||||
| F07C3.7.1 | |||||||||
| CE32853 | |||||||||
| Other_name | CELE_F07C3.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | aat-2 | ||||||||
| DB_info | Database | AceView | gene | 5J726 | |||||
| WormQTL | gene | WBGene00000003 | |||||||
| WormFlux | gene | WBGene00000003 | |||||||
| NDB | locus_tag | CELE_F07C3.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000003|UniProtKB=Q19151 | |||||||
| family | PTHR11785 | ||||||||
| NCBI | gene | 184126 | |||||||
| RefSeq | protein | NM_072993.6 | |||||||
| TrEMBL | UniProtAcc | Q19151 | |||||||
| UniProt_GCRP | UniProtAcc | Q19151 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aat | ||||||||
| Allele (29) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063661 | ||||||||
| 00063662 | |||||||||
| 00063663 | |||||||||
| 00063664 | |||||||||
| 00063665 | |||||||||
| 00106517 | |||||||||
| 00106518 | |||||||||
| 00106519 | |||||||||
| Ortholog (49) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | aat-2 encodes a predicted amino acid transporter catalytic subunit; when co-expressed in Xenopus oocytes with a glycoprotein subunit, however, AAT-2 is not able to induce amino acid uptake. | Paper_evidence | WBPaper00006408 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 02 Mar 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); esophagitis; and glioblastoma. Is an ortholog of human SLC7A5 (solute carrier family 7 member 5) and SLC7A8 (solute carrier family 7 member 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (25) | ||||||||
| Molecular_info | Corresponding_CDS | F07C3.7 | |||||||
| Corresponding_CDS_history | F07C3.7:wp90 | ||||||||
| Corresponding_transcript | F07C3.7.1 | ||||||||
| Other_sequence | ACC17502_1 | ||||||||
| Tcol_isotig16366 | |||||||||
| JI171417.1 | |||||||||
| FC543684.1 | |||||||||
| JI469365.1 | |||||||||
| BMC05482_1 | |||||||||
| Associated_feature | WBsf652898 | ||||||||
| WBsf655577 | |||||||||
| WBsf669209 | |||||||||
| WBsf1000842 | |||||||||
| WBsf1000843 | |||||||||
| WBsf234209 | |||||||||
| WBsf234210 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00077418 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00012807 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030596 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112391 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043880 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1016268 | ||||||||
| Expr1030002 | |||||||||
| Expr1147855 | |||||||||
| Expr2009065 | |||||||||
| Expr2027301 | |||||||||
| Drives_construct | WBCnstr00037803 | ||||||||
| Construct_product | WBCnstr00037803 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (165) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | V | Position | 1.95832 | Error | 0.001597 | |||
| Positive | Positive_clone | F07C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006408 | ||||||||
| WBPaper00032078 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042390 | |||||||||
| WBPaper00050950 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
