WormBase Tree Display for Gene: WBGene00000020
expand all nodes | collapse all nodes | view schema
| WBGene00000020 | Evidence | Person_evidence | WBPerson583 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson36 | |||||||||
| SMap | S_parent | Sequence | CHROMOSOME_I | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | abt-2 | Person_evidence | WBPerson36 | |||||
| Sequence_name | F12B6.1 | ||||||||
| Molecular_name | F12B6.1a | ||||||||
| F12B6.1a.1 | |||||||||
| CE40156 | |||||||||
| F12B6.1b | |||||||||
| CE49736 | |||||||||
| F12B6.1b.1 | |||||||||
| Other_name | Y39G10AL.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F12B6.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | abt-2 | ||||||||
| DB_info | Database | AceView | gene | 1C828 | |||||
| WormQTL | gene | WBGene00000020 | |||||||
| WormFlux | gene | WBGene00000020 | |||||||
| NDB | locus_tag | CELE_F12B6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000020|UniProtKB=Q1RS86 | |||||||
| family | PTHR19229 | ||||||||
| NCBI | gene | 171782 | |||||||
| RefSeq | protein | NM_058548.7 | |||||||
| NM_001381367.1 | |||||||||
| TrEMBL | UniProtAcc | Q1RS86 | |||||||
| X5LXB2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q1RS86 | |||||||
| OMIM | gene | 600046 | |||||||
| 601691 | |||||||||
| 605414 | |||||||||
| 607800 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 06 Apr 2006 16:52:19 | WBPerson2970 | Event | Acquires_merge | WBGene00021459 | ||||
| Acquires_merge | WBGene00021459 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abt | ||||||||
| Allele (307) | |||||||||
| Strain | WBStrain00031555 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (73) | |||||||||
| Paralog | WBGene00000019 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00000421 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000022 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000023 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abt-2 encodes a predicted ATP-binding cassette (ABC) transporter that is a member of the ABCA subfamily of transport proteins; ABT-2 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes. | Paper_evidence | WBPaper00006421 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 24 Jul 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATPase-coupled transmembrane transporter activity and lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease 9; autosomal recessive congenital ichthyosis (multiple); hypolipoproteinemia (multiple); and retinal degeneration (multiple). Is an ortholog of human ABCA12 (ATP binding cassette subfamily A member 12). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (22) | ||||||||
| Molecular_info | Corresponding_CDS | F12B6.1a | |||||||
| F12B6.1b | |||||||||
| Corresponding_CDS_history | F12B6.1:wp156 | ||||||||
| Corresponding_transcript | F12B6.1a.1 | ||||||||
| F12B6.1b.1 | |||||||||
| Other_sequence (41) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044430 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056260 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00003366 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3314 | ||||||||
| Expr3315 | |||||||||
| Expr1018096 | |||||||||
| Expr1030007 | |||||||||
| Expr1148376 | |||||||||
| Expr2009095 | |||||||||
| Expr2027331 | |||||||||
| Drives_construct | WBCnstr00011310 | ||||||||
| WBCnstr00011311 | |||||||||
| WBCnstr00037792 | |||||||||
| Construct_product | WBCnstr00037792 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (140) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | I | Position | -10.4952 | Error | 0.191835 | |||
| Positive | Positive_clone | F12B6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4198 | |||||||
| 5628 | |||||||||
| 5674 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006421 | ||||||||
| WBPaper00027644 | |||||||||
| WBPaper00031484 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00052700 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058442 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
