WormBase Tree Display for Gene: WBGene00000162
expand all nodes | collapse all nodes | view schema
| WBGene00000162 | SMap | S_parent | Sequence | W09G10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | apd-3 | Person_evidence | WBPerson360 | |||||
| WBPerson567 | |||||||||
| Sequence_name | W09G10.4 | ||||||||
| Molecular_name | W09G10.4a | ||||||||
| W09G10.4a.1 | |||||||||
| CE24044 | |||||||||
| W09G10.4b | |||||||||
| CE28513 | |||||||||
| W09G10.4b.1 | |||||||||
| Other_name | apt-5 | Person_evidence | WBPerson625 | ||||||
| CELE_W09G10.4 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | apd-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | apd-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | apd | ||||||||
| Allele (326) | |||||||||
| Strain | WBStrain00032938 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | apd-3 encodes an adaptin: specifically, it encodes an ortholog of the delta subunit of adaptor protein complex 3 (AP-3). | Paper_evidence | WBPaper00004907 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in intracellular transport and synaptic vesicle membrane organization. Predicted to be located in endosome membrane; presynaptic endosome; and terminal bouton. Predicted to be part of AP-3 adaptor complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome. Is an ortholog of human AP3D1 (adaptor related protein complex 3 subunit delta 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:3753 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:568) | ||||
| Molecular_info | Corresponding_CDS | W09G10.4a | |||||||
| W09G10.4b | |||||||||
| Corresponding_transcript | W09G10.4a.1 | ||||||||
| W09G10.4b.1 | |||||||||
| Other_sequence (73) | |||||||||
| Associated_feature | WBsf665437 | ||||||||
| WBsf987276 | |||||||||
| WBsf987277 | |||||||||
| WBsf1011915 | |||||||||
| WBsf1011916 | |||||||||
| WBsf222869 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00090898 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00061006 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036411 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065632 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019758 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082978 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114644 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055052 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019949 | ||||||||
| Expr1030091 | |||||||||
| Expr1158590 | |||||||||
| Expr2009355 | |||||||||
| Expr2027591 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | II | Position | -6.24293 | Error | 0.000399 | |||
| Positive | Positive_clone | W09G10 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00004907 | ||||||||
| WBPaper00006219 | |||||||||
| WBPaper00026639 | |||||||||
| WBPaper00029101 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062416 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
