WormBase Tree Display for Gene: WBGene00000410
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| WBGene00000410 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cdk-9 | Person_evidence | WBPerson346 | |||||
| Sequence_name | H25P06.2 | ||||||||
| Molecular_name | H25P06.2a | ||||||||
| H25P06.2a.1 | |||||||||
| CE37838 | |||||||||
| H25P06.2b | |||||||||
| CE37839 | |||||||||
| H25P06.2b.1 | |||||||||
| Other_name | CELE_H25P06.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cdk-9 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdk | ||||||||
| Allele (164) | |||||||||
| Strain | WBStrain00024047 | ||||||||
| WBStrain00024060 | |||||||||
| WBStrain00024061 | |||||||||
| WBStrain00024067 | |||||||||
| WBStrain00024066 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Concise_description | cdk-9 encodes an ortholog of the metazoan transcription elongation factor kinase CDK-9; it is required for general expression of early embryonic genes, and thought (in conjunction with partners such as cyclin T) to form a transcription factor (P-TEFb) that which prevents transcription from stalling in vitro. | Paper_evidence | WBPaper00004192 | |||||
| WBPaper00005411 | |||||||||
| WBPaper00012800 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Involved in embryo development; germ cell development; and nematode larval development. Part of euchromatin. Expressed in several structures, including germ line. Human ortholog(s) of this gene implicated in congestive heart failure. Is an ortholog of human CDK9 (cyclin dependent kinase 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:6000 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1780) | ||||
| Molecular_info | Corresponding_CDS | H25P06.2a | |||||||
| H25P06.2b | |||||||||
| Corresponding_CDS_history | H25P06.2a:wp136 | ||||||||
| H25P06.2b:wp136 | |||||||||
| Corresponding_transcript | H25P06.2a.1 | ||||||||
| H25P06.2b.1 | |||||||||
| Other_sequence | CR01437 | ||||||||
| CRC07475_1 | |||||||||
| CRC07674_1 | |||||||||
| CR11356 | |||||||||
| Associated_feature | WBsf985267 | ||||||||
| WBsf985268 | |||||||||
| WBsf218528 | |||||||||
| Transcription_factor | WBTranscriptionFactor000152 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr11659 | ||||||||
| Expr1014827 | |||||||||
| Expr1030227 | |||||||||
| Expr1153215 | |||||||||
| Expr2009815 | |||||||||
| Expr2028056 | |||||||||
| Construct_product | WBCnstr00019154 | ||||||||
| WBCnstr00019155 | |||||||||
| WBCnstr00019280 | |||||||||
| WBCnstr00019281 | |||||||||
| WBCnstr00019282 | |||||||||
| Antibody | WBAntibody00000536 | ||||||||
| Microarray_results (32) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction (60) | |||||||||
| Map_info | Map | I | Position | 7.94628 | Error | 0.001706 | |||
| Positive | Positive_clone | H25P06 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
