WormBase Tree Display for Gene: WBGene00000440
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| WBGene00000440 | SMap | S_parent | Sequence | D1007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-17 | Person_evidence | WBPerson83 | |||||
| Sequence_name | D1007.1 | ||||||||
| Molecular_name | D1007.1 | ||||||||
| D1007.1.1 | |||||||||
| CE09036 | |||||||||
| Other_name | ceh-42 | ||||||||
| CELE_D1007.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | ceh-17 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (25) | |||||||||
| Legacy_information | Phox2/Arix1/smox-3 family homeobox gene [info from Burglin 03/98] | ||||||||
| Strain | WBStrain00035300 | ||||||||
| WBStrain00035301 | |||||||||
| WBStrain00035312 | |||||||||
| WBStrain00008608 | |||||||||
| WBStrain00052001 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Ortholog (26) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Concise_description | ceh-17 encodes a phox-2-like homeodomain protein that is a member of the Q50 paired-like class of homeobox proteins and the vertebrate orthologue of Phox2a and Phox2b; that affects ALA and SIA axonal development; ceh-17 affects ALA and SIA antero-posterior axonal growth and navigation, and is expressed in five neurons of the ring ganglia (ALA and the 4 SIAs) with strongest expression in embryos and in L1 stage larvae. | Paper_evidence | WBPaper00004283 | |||||
| WBPaper00015614 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson324 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in axon guidance; positive regulation of transcription by RNA polymerase II; and regulation of axon extension. Located in nucleus. Expressed in DA8; head muscle; head neurons; and somatic nervous system. Human ortholog(s) of this gene implicated in several diseases, including congenital central hypoventilation syndrome; congenital fibrosis of the extraocular muscles 2; and neuroblastoma. Is an ortholog of human PHOX2A (paired like homeobox 2A). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9143) | ||||
| DOID:0060731 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9143) | ||||||
| DOID:769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9143) | ||||||
| DOID:0081016 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:691) | ||||||
| Molecular_info | Corresponding_CDS | D1007.1 | |||||||
| Corresponding_transcript | D1007.1.1 | ||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf978409 | ||||||||
| Transcription_factor | WBTranscriptionFactor000388 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00084772 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003251 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030301 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043320 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram57 | ||||||||
| Chronogram86 | |||||||||
| Chronogram88 | |||||||||
| Expr1039 | |||||||||
| Expr7489 | |||||||||
| Expr15566 | |||||||||
| Expr1017681 | |||||||||
| Expr1147298 | |||||||||
| Expr2009863 | |||||||||
| Expr2028103 | |||||||||
| Drives_construct | WBCnstr00001110 | ||||||||
| WBCnstr00001111 | |||||||||
| WBCnstr00001122 | |||||||||
| WBCnstr00006931 | |||||||||
| WBCnstr00010043 | |||||||||
| WBCnstr00012633 | |||||||||
| WBCnstr00037537 | |||||||||
| WBCnstr00042410 | |||||||||
| Construct_product | WBCnstr00010043 | ||||||||
| WBCnstr00037537 | |||||||||
| WBCnstr00039986 | |||||||||
| WBCnstr00039998 | |||||||||
| WBCnstr00042410 | |||||||||
| Antibody | WBAntibody00000299 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (69) | |||||||||
| Interaction (72) | |||||||||
| WBProcess | WBbiopr:00000044 | ||||||||
| Map_info | Map | I | Position | -1.0462 | Error | 0.001888 | |||
| Positive | Positive_clone | D1007 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4204 | |||||||
| 5492 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (43) | |||||||||
| Remark | renamed by T.Burglin 1/99. See also wbg15.5p29 [030204 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
