WormBase Tree Display for Gene: WBGene00000452
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| WBGene00000452 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-31 | Person_evidence | WBPerson83 | |||||
| Sequence_name | C33D12.1 | ||||||||
| Molecular_name | C33D12.1 | ||||||||
| C33D12.1.1 | |||||||||
| CE42831 | |||||||||
| Other_name | CELE_C33D12.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-31 | ||||||||
| DB_info | Database | AceView | gene | XD686 | |||||
| WormQTL | gene | WBGene00000452 | |||||||
| WormFlux | gene | WBGene00000452 | |||||||
| NDB | locus_tag | CELE_C33D12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000452|UniProtKB=Q22910 | |||||||
| family | PTHR24330 | ||||||||
| NCBI | gene | 191621 | |||||||
| RefSeq | protein | NM_076124.8 | |||||||
| SwissProt | UniProtAcc | Q22910 | |||||||
| TREEFAM | TREEFAM_ID | TF316128 | |||||||
| UniProt_GCRP | UniProtAcc | Q22910 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (27) | |||||||||
| Legacy_information | [Burglin,01/98] Bar type homeobox gene. | ||||||||
| Strain | WBStrain00001152 | ||||||||
| WBStrain00052033 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076703 | ||||||||
| 00076704 | |||||||||
| 00076705 | |||||||||
| 00076706 | |||||||||
| 00076707 | |||||||||
| 00076708 | |||||||||
| 00076709 | |||||||||
| 00076710 | |||||||||
| 00107421 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000442 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00000451 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007025 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | ceh-31 encodes a protein containing a homeobox domain. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in AVB; head neurons; nerve ring neurons; and pharynx. Human ortholog(s) of this gene implicated in Alzheimer's disease; high grade glioma; and triple-receptor negative breast cancer. Is an ortholog of human BARHL1 (BarH like homeobox 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:953) | ||||
| DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:953) | ||||||
| DOID:0060081 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:953) | ||||||
| Molecular_info | Corresponding_CDS | C33D12.1 | |||||||
| Corresponding_CDS_history | C33D12.1:wp153 | ||||||||
| C33D12.1:wp192 | |||||||||
| Corresponding_transcript | C33D12.1.1 | ||||||||
| Other_sequence | Dviv_isotig19333 | ||||||||
| TS02052 | |||||||||
| MH06102 | |||||||||
| TSC06121_1 | |||||||||
| JI474474.1 | |||||||||
| Associated_feature | WBsf653803 | ||||||||
| WBsf670275 | |||||||||
| WBsf978771 | |||||||||
| WBsf1004511 | |||||||||
| WBsf1004512 | |||||||||
| WBsf1004513 | |||||||||
| WBsf237132 | |||||||||
| Transcription_factor | WBTranscriptionFactor000590 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00011523 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00093988 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041746 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5407 | ||||||||
| Expr7458 | |||||||||
| Expr15580 | |||||||||
| Expr1013870 | |||||||||
| Expr1030258 | |||||||||
| Expr1145767 | |||||||||
| Expr1200130 | |||||||||
| Expr2009876 | |||||||||
| Expr2028116 | |||||||||
| Drives_construct | WBCnstr00002044 | ||||||||
| WBCnstr00012602 | |||||||||
| WBCnstr00037526 | |||||||||
| Construct_product | WBCnstr00016775 | ||||||||
| WBCnstr00037526 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (99) | |||||||||
| Interaction (43) | |||||||||
| Map_info | Map | X | Position | -12.3436 | Error | 0.03413 | |||
| Positive | Positive_clone | C33D12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00015440 | ||||||||
| WBPaper00027309 | |||||||||
| WBPaper00032309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060123 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
