WormBase Tree Display for Gene: WBGene00000547
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| WBGene00000547 | SMap | S_parent | Sequence | Y77E11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clp-7 | Person_evidence | WBPerson349 | |||||
| Sequence_name | Y77E11A.11 | ||||||||
| Molecular_name | Y77E11A.11a | ||||||||
| Y77E11A.11a.1 | |||||||||
| CE48001 | |||||||||
| Y77E11A.11b | |||||||||
| CE48696 | |||||||||
| Y77E11A.11b.1 | |||||||||
| Other_name | CELE_Y77E11A.11 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | clp-7 | ||||||||
| DB_info | Database | AceView | gene | 4C200 | |||||
| WormQTL | gene | WBGene00000547 | |||||||
| WormFlux | gene | WBGene00000547 | |||||||
| NDB | locus_tag | CELE_Y77E11A.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000547|UniProtKB=Q9N4B1 | |||||||
| family | PTHR10183 | ||||||||
| NCBI | gene | 176953 | |||||||
| RefSeq | protein | NM_067681.6 | |||||||
| NM_001380044.1 | |||||||||
| TrEMBL | UniProtAcc | U4PMH7 | |||||||
| Q9N4B1 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N4B1 | |||||||
| OMIM | gene | 114220 | |||||||
| 114240 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clp | ||||||||
| Allele (276) | |||||||||
| Strain | WBStrain00032768 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (71) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Concise_description | clp-7 encodes a member of the calpain family of cysteine proteases. | Curator_confirmed | WBPerson48 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytoplasm. Expressed in several structures, including excretory cell; hypodermis; neurons; ventral nerve cord; and vulva. Human ortholog(s) of this gene implicated in Alzheimer's disease; autosomal dominant limb-girdle muscular dystrophy; autosomal recessive limb-girdle muscular dystrophy type 2A; and hereditary spastic paraplegia 76. Is an ortholog of human CAPN3 (calpain 3). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1476,HGNC:1479) | ||||
| DOID:0110275 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1480) | ||||||
| DOID:0110273 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1480) | ||||||
| DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1480) | ||||||
| DOID:0110821 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1476) | ||||||
| Molecular_info | Corresponding_CDS | Y77E11A.11a | |||||||
| Y77E11A.11b | |||||||||
| Corresponding_transcript | Y77E11A.11a.1 | ||||||||
| Y77E11A.11b.1 | |||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf651648 | ||||||||
| WBsf995440 | |||||||||
| WBsf1016727 | |||||||||
| WBsf229766 | |||||||||
| WBsf229767 | |||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr10019 | ||||||||
| Expr1012676 | |||||||||
| Expr1030328 | |||||||||
| Expr1161916 | |||||||||
| Expr2010248 | |||||||||
| Expr2028490 | |||||||||
| Drives_construct | WBCnstr00014666 | ||||||||
| Construct_product | WBCnstr00014654 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | IV | Position | -18.8721 | Error | 0.099484 | |||
| Positive | Positive_clone | Y77E11A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005513 | ||||||||
| WBPaper00030720 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047599 | |||||||||
| WBPaper00048416 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065924 | |||||||||
| Remark | Sequence connection from [Kuwabara PE] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
