WormBase Tree Display for Gene: WBGene00000550
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| WBGene00000550 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | clu-1 | |||||||
| Sequence_name | F55H2.6 | ||||||||
| Molecular_name | F55H2.6 | ||||||||
| F55H2.6.1 | |||||||||
| CE00213 | |||||||||
| Other_name | CELE_F55H2.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | clu-1 | ||||||||
| DB_info | Database | AceView | gene | 3K606 | |||||
| WormQTL | gene | WBGene00000550 | |||||||
| WormFlux | gene | WBGene00000550 | |||||||
| NDB | locus_tag | CELE_F55H2.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000550|UniProtKB=P34466 | |||||||
| family | PTHR12601 | ||||||||
| NCBI | gene | 176341 | |||||||
| RefSeq | protein | NM_066696.9 | |||||||
| SwissProt | UniProtAcc | P34466 | |||||||
| TREEFAM | TREEFAM_ID | TF300565 | |||||||
| UniProt_GCRP | UniProtAcc | P34466 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clu | ||||||||
| Allele (56) | |||||||||
| Legacy_information | [Wickham JQ] No mutants known. Named clu for clustering. Homology to _cluA_ in _D. discoideum_ (Zhu et. al., _The _cluA-_ mutant of Dictyostelium identifies a novel class of proteins required for dispersion of mitochondria._ Proc. Natl. Acad. Sci. USA, 94:7308-7313, July 1997) and _CLU1_ in _S. cerevisiae_ (Fields et. al. _The _S. cerevisiae CLU1_ and _D. discoideum cluA_ genes are functional homologues that influence mitochondrial morphology and distribution._ Journal of Cell Science 111:1717-1727, 1998) | ||||||||
| Strain | WBStrain00023490 | ||||||||
| WBStrain00023491 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042502 | ||||||||
| 00042503 | |||||||||
| 00042504 | |||||||||
| 00042505 | |||||||||
| 00042506 | |||||||||
| 00042507 | |||||||||
| 00042508 | |||||||||
| 00107581 | |||||||||
| Contained_in_operon | CEOP3592 | ||||||||
| Ortholog (37) | |||||||||
| Structured_description | Concise_description | clu-1 encodes an ortholog of CLU1/TIF31 in S. cerevisiae, which directs proper cytoplasmic distribution of mitochondria and physically interacts with eukaryotic translation initiation factor 3 (eIF3); worm CLU-1 may be required for the proper distribution of mitochondria. | Paper_evidence | WBPaper00001111 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00012771 | |||||||||
| WBPaper00013107 | |||||||||
| WBPaper00013589 | |||||||||
| WBPaper00013618 | |||||||||
| WBPaper00013630 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 10 Mar 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in intracellular distribution of mitochondria. Predicted to be located in cytoplasm. Is an ortholog of human CLUH (clustered mitochondria homolog). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F55H2.6 | |||||||
| Corresponding_transcript | F55H2.6.1 | ||||||||
| Other_sequence (43) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00106985 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006006 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015758 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048571 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010338 | ||||||||
| Expr1030331 | |||||||||
| Expr1152356 | |||||||||
| Expr2010256 | |||||||||
| Expr2028498 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (190) | |||||||||
| Interaction (134) | |||||||||
| Map_info | Map | III | Position | 0.575832 | Error | 0.000427 | |||
| Positive | Positive_clone | F55H2 | Author_evidence | Wickham JQ | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013589 | ||||||||
| WBPaper00013618 | |||||||||
| WBPaper00027281 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00052117 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058103 | |||||||||
| WBPaper00062599 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
