WormBase Tree Display for Gene: WBGene00000551
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| WBGene00000551 | Evidence | Person_evidence | WBPerson345 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | |||||||||
| SMap | S_parent | Sequence | C50F7 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | clx-1 | |||||||
| Sequence_name | C50F7.2 | ||||||||
| Molecular_name | C50F7.2 | ||||||||
| C50F7.2.1 | |||||||||
| CE39705 | |||||||||
| Other_name | col-4 | Person_evidence | WBPerson345 | ||||||
| WBPerson651 | |||||||||
| CELE_C50F7.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | clx-1 | ||||||||
| DB_info | Database | AceView | gene | 4I499 | |||||
| WormQTL | gene | WBGene00000551 | |||||||
| WormFlux | gene | WBGene00000551 | |||||||
| NDB | locus_tag | CELE_C50F7.2 | |||||||
| NCBI | gene | 177556 | |||||||
| RefSeq | protein | NM_068868.6 | |||||||
| TrEMBL | UniProtAcc | Q18756 | |||||||
| UniProt_GCRP | UniProtAcc | Q18756 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clx | ||||||||
| Allele (16) | |||||||||
| Strain | WBStrain00047487 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00160378 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | |||||
| WBGene00153631 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| CSP32.g6424 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| chrIV_pilon.g10902 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | clx-1 encodes a protein that contains 23 copies of a 15 amino acid repeat, possibly derived from a collagen triplet; there is no transcript evidence for this locus. | Paper_evidence | WBPaper00014270 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including rotenone; procyanidin; and Sodium Chloride based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C50F7.2 | |||||||
| Corresponding_CDS_history | C50F7.2:wp154 | ||||||||
| Corresponding_transcript | C50F7.2.1 | ||||||||
| Other_sequence | CR11765 | ||||||||
| CRC01703_1 | |||||||||
| CR01749 | |||||||||
| Associated_feature | WBsf997043 | ||||||||
| WBsf1017760 | |||||||||
| WBsf228571 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012244 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00042954 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017528 | ||||||||
| Expr1030332 | |||||||||
| Expr1146921 | |||||||||
| Drives_construct | WBCnstr00037459 | ||||||||
| Construct_product | WBCnstr00037459 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (100) | |||||||||
| SAGE_tag | SAGE:ccgtggatccatcggat | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:agcaacgagt | Strand | Antisense | |||||||
| SAGE:ccgtggatcc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tgattttcat | Strand | Antisense | |||||||
| Interaction (75) | |||||||||
| Map_info | Map | IV | Position | 3.46307 | Error | 0.005263 | |||
| Positive | Positive_clone | C50F7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| CH#COL4 | |||||||||
| Mapping_data | Multi_point | 1648 | |||||||
| 1651 | |||||||||
| 1655 | |||||||||
| 1720 | |||||||||
| 1721 | |||||||||
| 1884 | |||||||||
| 4397 | |||||||||
| 4520 | |||||||||
| Reference | WBPaper00000751 | ||||||||
| WBPaper00001697 | |||||||||
| WBPaper00001743 | |||||||||
| WBPaper00014026 | |||||||||
| WBPaper00014270 | |||||||||
| WBPaper00014865 | |||||||||
| WBPaper00015300 | |||||||||
| WBPaper00038491 | |||||||||
| Remark | This gene encodes multiple tandem repeats of GAPPSGGPPGPF(D/N)PS, Gly/Pro rich but is not collagenous, and therefore was initially misclassified as a collagen. | Person_evidence | WBPerson345 | ||||||
| WBPerson651 | |||||||||
| Method | Gene |
