WormBase Tree Display for Gene: WBGene00000594
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| WBGene00000594 | SMap | S_parent | Sequence | T28C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-3 | Person_evidence | WBPerson345 | |||||
| Sequence_name | T28C6.6 | ||||||||
| Molecular_name | T28C6.6 | ||||||||
| T28C6.6.1 | |||||||||
| CE03749 | |||||||||
| Other_name | col-117 | Accession_evidence | EMBL | AY347574 | |||||
| CELE_T28C6.6 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | col-3 | ||||||||
| DB_info | Database | AceView | gene | 4J589 | |||||
| WormQTL | gene | WBGene00000594 | |||||||
| WormFlux | gene | WBGene00000594 | |||||||
| NDB | locus_tag | CELE_T28C6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000594|UniProtKB=G5EDG6 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 177695 | |||||||
| RefSeq | protein | NM_069126.6 | |||||||
| TrEMBL | UniProtAcc | G5EDG6 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDG6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele | WBVar01500079 | ||||||||
| WBVar01498996 | |||||||||
| WBVar01730228 | |||||||||
| WBVar01854836 | |||||||||
| WBVar01854837 | |||||||||
| WBVar00300069 | |||||||||
| WBVar01499633 | |||||||||
| WBVar00928687 | |||||||||
| WBVar01498928 | |||||||||
| WBVar01500245 | |||||||||
| Legacy_information | Transcript present in all stages. | ||||||||
| [C.elegansII] NMK. Transcript present in all stages, abundant in L4, decreases in adult. [Cox and Hirsh 1985] | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00014025 | ||||||||
| 00014026 | |||||||||
| 00014027 | |||||||||
| 00107609 | |||||||||
| Ortholog (35) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). | Paper_evidence | WBPaper00000748 | |||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 01 Sep 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28C6.6 | |||||||
| Corresponding_transcript | T28C6.6.1 | ||||||||
| Other_sequence (216) | |||||||||
| Associated_feature | WBsf646191 | ||||||||
| WBsf997287 | |||||||||
| WBsf1017884 | |||||||||
| WBsf228744 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027488 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019391 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071907 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054396 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026424 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071434 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023620 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr752 | ||||||||
| Expr1157947 | |||||||||
| Expr2010392 | |||||||||
| Expr2028634 | |||||||||
| Drives_construct | WBCnstr00006836 | ||||||||
| WBCnstr00037440 | |||||||||
| Construct_product | WBCnstr00037440 | ||||||||
| Microarray_results | SMD_2T28C6.6 | ||||||||
| SMD_T28C6.6 | |||||||||
| GPL9450_T28C6.6 | |||||||||
| cea2.d.40651 | |||||||||
| Expression_cluster (188) | |||||||||
| Interaction (41) | |||||||||
| Map_info | Map | IV | Position | 3.9782 | Error | 0.002068 | |||
| Positive | Positive_clone | COL3 | |||||||
| T28C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||||
| Mapping_data | Multi_point | 1647 | |||||||
| 1650 | |||||||||
| 1654 | |||||||||
| 1884 | |||||||||
| 5357 | |||||||||
| Reference | WBPaper00000569 | ||||||||
| WBPaper00000748 | |||||||||
| WBPaper00000751 | |||||||||
| WBPaper00001515 | |||||||||
| WBPaper00002476 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
