WormBase Tree Display for Gene: WBGene00000599
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| WBGene00000599 | SMap | S_parent | Sequence | B0222 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | col-10 | Person_evidence | WBPerson345 | |||||
| Sequence_name | B0222.8 | ||||||||
| Molecular_name | B0222.8 | ||||||||
| B0222.8.1 | |||||||||
| CE06699 | |||||||||
| Other_name | CELE_B0222.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | col-10 | ||||||||
| DB_info | Database | AceView | gene | 5J644 | |||||
| WormQTL | gene | WBGene00000599 | |||||||
| WormFlux | gene | WBGene00000599 | |||||||
| NDB | locus_tag | CELE_B0222.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000599|UniProtKB=Q17460 | |||||||
| family | PTHR24637 | ||||||||
| NCBI | gene | 179298 | |||||||
| RefSeq | protein | NM_001383367.2 | |||||||
| SwissProt | UniProtAcc | Q17460 | |||||||
| TREEFAM | TREEFAM_ID | TF316783 | |||||||
| UniProt_GCRP | UniProtAcc | Q17460 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | col | ||||||||
| Allele (15) | |||||||||
| Legacy_information | [C.elegansII] NMK. Transcript present at all stages, most abundant in L4. [Cox and Hirsh 1985] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00058232 | ||||||||
| 00058233 | |||||||||
| 00058234 | |||||||||
| 00058235 | |||||||||
| 00058236 | |||||||||
| 00058237 | |||||||||
| 00107613 | |||||||||
| Ortholog (77) | |||||||||
| Paralog (39) | |||||||||
| Structured_description | Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0222.8 | |||||||
| Corresponding_transcript | B0222.8.1 | ||||||||
| Other_sequence (314) | |||||||||
| Associated_feature | WBsf652890 | ||||||||
| WBsf652891 | |||||||||
| WBsf234191 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00009603 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038759 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00009601 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00077702 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103137 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028010 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr753 | ||||||||
| Expr1019612 | |||||||||
| Expr1030350 | |||||||||
| Expr1142970 | |||||||||
| Expr2010307 | |||||||||
| Expr2028551 | |||||||||
| Drives_construct (33) | |||||||||
| Construct_product | WBCnstr00037436 | ||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (280) | |||||||||
| Interaction (70) | |||||||||
| Map_info | Map | V | Position | 1.9478 | |||||
| Positive | Positive_clone | B0222 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200225 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (1.94685) | |||||||||
| Method | Gene |
