WormBase Tree Display for Gene: WBGene00000623
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| WBGene00000623 | Evidence | Person_evidence | WBPerson345 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| WBPerson651 | ||||||||||
| SMap | S_parent | Sequence | Y18H1A | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | col-46 | Person_evidence | WBPerson345 | ||||||
| Sequence_name | Y18H1A.13 | |||||||||
| Molecular_name | Y18H1A.13 | |||||||||
| Y18H1A.13.1 | ||||||||||
| CE44999 | ||||||||||
| Other_name | CELE_Y18H1A.13 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | col-46 | |||||||||
| DB_info | Database | AceView | gene | 1B216 | ||||||
| WormFlux | gene | WBGene00000623 | ||||||||
| NDB | locus_tag | CELE_Y18H1A.13 | ||||||||
| Panther | gene | CAEEL|WormBase=WBGene00000623|UniProtKB=Q1EPL5 | ||||||||
| family | PTHR24637 | |||||||||
| NCBI | gene | 4363005 | ||||||||
| RefSeq | protein | NM_001047236.4 | ||||||||
| TrEMBL | UniProtAcc | Q1EPL5 | ||||||||
| UniProt_GCRP | UniProtAcc | Q1EPL5 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 31 May 2006 08:42:20 | WBPerson1867 | Event | Changed_class | Pseudogene | CDS | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | col | |||||||||
| Allele (112) | ||||||||||
| Strain | WBStrain00055289 | |||||||||
| RNASeq_FPKM (74) | ||||||||||
| GO_annotation | 00066645 | |||||||||
| 00066646 | ||||||||||
| 00066647 | ||||||||||
| Ortholog (30) | ||||||||||
| Paralog (162) | ||||||||||
| Structured_description | Concise_description | col-46 encodes a cuticle collagen. | Curator_confirmed | WBPerson1843 | ||||||
| Date_last_updated | 03 Apr 2007 00:00:00 | |||||||||
| Automated_description | Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | Y18H1A.13 | ||||||||
| Corresponding_CDS_history | Y18H1A.13:wp205 | |||||||||
| Corresponding_transcript | Y18H1A.13.1 | |||||||||
| Corresponding_pseudogene_history | Y18H1A.13:wp159 | |||||||||
| Other_sequence (14) | ||||||||||
| Associated_feature | WBsf648914 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004556 | Inferred_automatically | RNAi_primary | ||||||
| Expr_pattern | Expr1012099 | |||||||||
| Expr1159138 | ||||||||||
| Expr2010399 | ||||||||||
| Expr2028641 | ||||||||||
| Drives_construct | WBCnstr00037419 | |||||||||
| Construct_product | WBCnstr00037419 | |||||||||
| Microarray_results (16) | ||||||||||
| Expression_cluster (147) | ||||||||||
| Map_info | Map | I | Position | -18.4591 | Error | 0.039545 | ||||
| Positive | Positive_clone | Y18H1A | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
