WormBase Tree Display for Gene: WBGene00000763
expand all nodes | collapse all nodes | view schema
| WBGene00000763 | Evidence | Paper_evidence | WBPaper00005078 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| WBPaper00013270 | ||||||||||
| SMap | S_parent | Sequence | Y57G11C | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | coq-3 | Person_evidence | WBPerson247 | ||||||
| Sequence_name | Y57G11C.11 | |||||||||
| Molecular_name | Y57G11C.11a | |||||||||
| Y57G11C.11a.1 | ||||||||||
| CE14946 | ||||||||||
| Y57G11C.11b | ||||||||||
| Y57G11C.11c | ||||||||||
| Other_name | CELE_Y57G11C.11 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | coq-3 | |||||||||
| DB_info | Database | WormQTL | gene | WBGene00000763 | ||||||
| WormFlux | gene | WBGene00000763 | ||||||||
| NDB | locus_tag | CELE_Y57G11C.11 | ||||||||
| Panther | gene | CAEEL|WormBase=WBGene00000763|UniProtKB=O18235 | ||||||||
| family | PTHR43464 | |||||||||
| NCBI | gene | 178403 | ||||||||
| RefSeq | protein | NR_131652.1 | ||||||||
| NM_001047580.5 | ||||||||||
| NR_131651.1 | ||||||||||
| TREEFAM | TREEFAM_ID | TF314553 | ||||||||
| TrEMBL | UniProtAcc | O18235 | ||||||||
| UniProt_GCRP | UniProtAcc | O18235 | ||||||||
| RNAcentral | URSid | URS0000763C7D | ||||||||
| URS000076C18D | ||||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 12 Jul 2006 17:04:09 | WBPerson4025 | Event | Changed_class | Pseudogene | CDS | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0001217 | ||||||||
| Gene_class | coq | |||||||||
| Allele (57) | ||||||||||
| Strain | WBStrain00001500 | |||||||||
| WBStrain00026673 | ||||||||||
| WBStrain00035769 | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| GO_annotation (30) | ||||||||||
| Contained_in_operon | CEOP4580 | |||||||||
| Ortholog (38) | ||||||||||
| Paralog | WBGene00015999 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016023 | Caenorhabditis elegans | From_analysis | Panther | |||||||
| Structured_description | Concise_description | coq-3 encodes a putative 3,4-dihydroxy-5-hexaprenylbenzoatemethyltransferase, orthologous to S. cerevisiae COQ3; by orthology, COQ-3is predicted to be in a complex with COQ-4 (and perhaps COQ-6), and to berequired for two different steps of ubiquinone synthesis; COQ-3 isrequired for viability, ubiquinone (coenzyme Q9) biosynthesis and fornormally short lifespan; coq-3 null mutations are lethal; coq-3(RNAi)animals have reduced levels of coenzyme Q9 and superoxide, and haveabnormally long lifespans. | Paper_evidence | WBPaper00005078 | ||||||
| WBPaper00005863 | ||||||||||
| WBPaper00012777 | ||||||||||
| WBPaper00013532 | ||||||||||
| WBPaper00028311 | ||||||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 11 Aug 2006 00:00:00 | |||||||||
| Automated_description | Predicted to enable hexaprenyldihydroxybenzoate methyltransferase activity. Involved in nematode larval development and ubiquinone biosynthetic process. Predicted to be located in mitochondrial inner membrane. Predicted to be extrinsic component of mitochondrial inner membrane. Is an ortholog of human COQ3 (coenzyme Q3, methyltransferase). | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS | Y57G11C.11a | ||||||||
| Corresponding_CDS_history | Y57G11C.11b:wp243 | |||||||||
| Corresponding_transcript | Y57G11C.11b | |||||||||
| Y57G11C.11c | ||||||||||
| Y57G11C.11a.1 | ||||||||||
| Other_sequence (32) | ||||||||||
| Associated_feature (16) | ||||||||||
| Experimental_info | RNAi_result | WBRNAi00022972 | Inferred_automatically | RNAi_primary | ||||||
| WBRNAi00057682 | Inferred_automatically | RNAi_primary | ||||||||
| WBRNAi00021135 | Inferred_automatically | RNAi_primary | ||||||||
| WBRNAi00103621 | Inferred_automatically | RNAi_primary | ||||||||
| WBRNAi00037592 | Inferred_automatically | RNAi_primary | ||||||||
| Expr_pattern | Chronogram1084 | |||||||||
| Expr7076 | ||||||||||
| Expr1024457 | ||||||||||
| Expr1161091 | ||||||||||
| Expr2010463 | ||||||||||
| Expr2028703 | ||||||||||
| Drives_construct | WBCnstr00002357 | |||||||||
| Antibody | WBAntibody00002368 | |||||||||
| Microarray_results (31) | ||||||||||
| Expression_cluster (103) | ||||||||||
| Interaction (54) | ||||||||||
| Map_info | Map | IV | Position | 12.503 | Error | 0.01219 | ||||
| Positive | Positive_clone | Y57G11C | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Mapping_data | Multi_point | 4235 | ||||||||
| 4290 | ||||||||||
| Pseudo_map_position | ||||||||||
| Reference (18) | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
