WormBase Tree Display for Gene: WBGene00000892
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| WBGene00000892 | SMap | S_parent | Sequence | Y17G7B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyn-16 | Person_evidence | WBPerson466 | |||||
| Sequence_name | Y17G7B.9 | ||||||||
| Molecular_name | Y17G7B.9 | ||||||||
| Y17G7B.9.1 | |||||||||
| CE37939 | |||||||||
| Other_name | cyp-16 | Person_evidence | WBPerson466 | ||||||
| CELE_Y17G7B.9 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | cyn-16 | ||||||||
| DB_info | Database | AceView | gene | 2M318 | |||||
| WormQTL | gene | WBGene00000892 | |||||||
| WormFlux | gene | WBGene00000892 | |||||||
| NDB | locus_tag | CELE_Y17G7B.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000892|UniProtKB=Q9XXI7 | |||||||
| family | PTHR45625 | ||||||||
| NCBI | gene | 174843 | |||||||
| RefSeq | protein | NM_064161.7 | |||||||
| TREEFAM | TREEFAM_ID | TF105935 | |||||||
| TrEMBL | UniProtAcc | Q9XXI7 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XXI7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:21 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 16:20:03 | WBPerson1971 | Name_change | CGC_name | cyp-16 -> cyn-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyn | ||||||||
| Allele (317) | |||||||||
| Legacy_information | [Page AP] Y17G7B.9. No mutants known. | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00104452 | ||||||||
| 00104453 | |||||||||
| 00104454 | |||||||||
| 00104455 | |||||||||
| 00107961 | |||||||||
| 00107962 | |||||||||
| Contained_in_operon | CEOP2588 | ||||||||
| Ortholog (36) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cyn-16 encodes a highly diverged member of the cyclophilin family; CYN-16 exhibits low levels of peptidyl-prolyl cis/trans isomerase activity in vitro that is insensitive to the presence of cyclosporin A; a cyn-16::gfp fusion protein is expressed in the intestine during larval and adult stages of development, with particularly strong expression seen in the anterior and posterior ends; in dauer larvae, the cyn-16::gfp reporter is expressed in cell bodies and processes of ventral cord neurons and is no longer visible in the intestine. | Paper_evidence | WBPaper00005232 | |||||
| WBPaper00026884 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Mar 2007 00:00:00 | ||||||||
| Automated_description | Enables peptidyl-prolyl cis-trans isomerase activity. Predicted to be part of catalytic step 2 spliceosome. Expressed in intestine and ventral cord neurons. Is an ortholog of human CWC27 (CWC27 spliceosome associated cyclophilin). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y17G7B.9 | |||||||
| Corresponding_CDS_history | Y17G7B.9:wp137 | ||||||||
| Corresponding_transcript | Y17G7B.9.1 | ||||||||
| Other_sequence (56) | |||||||||
| Associated_feature | WBsf989993 | ||||||||
| WBsf1013376 | |||||||||
| WBsf224024 | |||||||||
| WBsf224025 | |||||||||
| WBsf224026 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055588 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036677 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1879 | ||||||||
| Expr1011377 | |||||||||
| Expr1030557 | |||||||||
| Expr1159094 | |||||||||
| Expr2010667 | |||||||||
| Expr2028907 | |||||||||
| Drives_construct | WBCnstr00010497 | ||||||||
| Construct_product | WBCnstr00010497 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction | WBInteraction000046214 | ||||||||
| WBInteraction000049727 | |||||||||
| WBInteraction000138016 | |||||||||
| WBInteraction000582099 | |||||||||
| Map_info | Map | II | Position | 5.87193 | Error | 0.039741 | |||
| Positive | Positive_clone | Y17G7B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005232 | ||||||||
| WBPaper00026884 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | This gene has been renamed with approval of the CGC (cyp-16->cyn-16) | Person_evidence | WBPerson466 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
