WormBase Tree Display for Gene: WBGene00001119
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| WBGene00001119 | SMap | S_parent | Sequence | C04C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dyf-3 | Person_evidence | WBPerson252 | |||||
| Sequence_name | C04C3.5 | ||||||||
| Molecular_name | C04C3.5a | ||||||||
| C04C3.5a.1 | |||||||||
| CE16811 | |||||||||
| C04C3.5b | |||||||||
| CE38264 | |||||||||
| C04C3.5c | |||||||||
| CE38265 | |||||||||
| C04C3.5a.2 | |||||||||
| C04C3.5b.1 | |||||||||
| C04C3.5c.1 | |||||||||
| Other_name | CELE_C04C3.5 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dyf-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00001119 | |||||
| WormFlux | gene | WBGene00001119 | |||||||
| NDB | locus_tag | CELE_C04C3.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001119|UniProtKB=Q6I6D4 | |||||||
| family | PTHR21547 | ||||||||
| NCBI | gene | 177107 | |||||||
| RefSeq | protein | NM_001380145.1 | |||||||
| NM_001380144.1 | |||||||||
| NM_001026125.3 | |||||||||
| SwissProt | UniProtAcc | Q6I6D4 | |||||||
| TREEFAM | TREEFAM_ID | TF314639 | |||||||
| UniProt_GCRP | UniProtAcc | Q6I6D4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 19 Aug 2005 11:30:04 | WBPerson2970 | Event | Acquires_merge | WBGene00015415 | ||||
| Acquires_merge | WBGene00015415 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dyf | ||||||||
| Allele (59) | |||||||||
| Legacy_information | [Herman RK] Defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Chemotaxis defective. ME4(m185), ME2(mn331), ME1(sa122) | ||||||||
| [C.elegansII] m185 : defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Chemotaxis defective. ME4(m185), ME2(mn331), ME1(sa122). OA2: mn331mut, sa122 [Starich et al. 1995] | |||||||||
| Strain | WBStrain00002554 | ||||||||
| WBStrain00034374 | |||||||||
| WBStrain00036751 | |||||||||
| WBStrain00040589 | |||||||||
| WBStrain00040590 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | dyf-3 encodes an ortholog of zebrafish cluap1 (also qilin, and like PKD2required to suppress kidney cysts) and human clusterin-associatedprotein 1 (CLUAP1); DYF-3 is predicted to have two coiled-coil domains;DYF-3 is required for normal assembly of middle and distal ciliarysegments, with dyf-3 mutants showing truncated sensory cilia; DYF-3 isrequired cell-autonomously for dye uptake; dyf-3 is expressed in amphid,phasmid, and IL2 sensory neurons; dyf-3 expression requires DAF-19. | Paper_evidence | WBPaper00002087 | |||||
| WBPaper00024960 | |||||||||
| WBPaper00026882 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 Dec 2006 00:00:00 | ||||||||
| Automated_description | Involved in several processes, including chemosensory behavior; cilium assembly; and response to alkaline pH. Located in axon; dendrite; and neuronal cell body. Expressed in neurons. Is an ortholog of human CLUAP1 (clusterin associated protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C04C3.5a | |||||||
| C04C3.5b | |||||||||
| C04C3.5c | |||||||||
| Corresponding_transcript | C04C3.5a.1 | ||||||||
| C04C3.5a.2 | |||||||||
| C04C3.5b.1 | |||||||||
| C04C3.5c.1 | |||||||||
| Other_sequence | Dviv_isotig29367 | ||||||||
| BU665950.1 | |||||||||
| JO470625.1 | |||||||||
| Acan_isotig16354 | |||||||||
| Dviv_isotig31485 | |||||||||
| NAC00727_1 | |||||||||
| JI172489.1 | |||||||||
| Associated_feature | WBsf651700 | ||||||||
| WBsf651701 | |||||||||
| WBsf995954 | |||||||||
| WBsf995955 | |||||||||
| WBsf1017072 | |||||||||
| WBsf1017073 | |||||||||
| WBsf1017074 | |||||||||
| WBsf229888 | |||||||||
| WBsf229889 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039586 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010102 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028418 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1535 | ||||||||
| Expr3471 | |||||||||
| Expr3753 | |||||||||
| Expr5141 | |||||||||
| Expr10131 | |||||||||
| Expr1018029 | |||||||||
| Expr1030715 | |||||||||
| Expr1143689 | |||||||||
| Expr2011134 | |||||||||
| Expr2029370 | |||||||||
| Drives_construct | WBCnstr00003121 | ||||||||
| WBCnstr00011408 | |||||||||
| WBCnstr00011644 | |||||||||
| WBCnstr00015986 | |||||||||
| Construct_product | WBCnstr00011408 | ||||||||
| WBCnstr00011644 | |||||||||
| WBCnstr00016077 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (229) | |||||||||
| Interaction (17) | |||||||||
| Anatomy_function | WBbtf0972 | ||||||||
| WBbtf0973 | |||||||||
| Map_info | Map | IV | Position | -4.54268 | Error | 0.026476 | |||
| Positive | Positive_clone | C04C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 3058 | |||||||
| 3059 | |||||||||
| 3060 | |||||||||
| 3061 | |||||||||
| 3062 | |||||||||
| 3063 | |||||||||
| 5073 | |||||||||
| Reference (20) | |||||||||
| Method | Gene |
