WormBase Tree Display for Gene: WBGene00001129
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| WBGene00001129 | SMap | S_parent | Sequence | C27H5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dyf-13 | Paper_evidence | WBPaper00025203 | |||||
| Person_evidence | WBPerson252 | ||||||||
| Sequence_name | C27H5.7 | ||||||||
| Molecular_name | C27H5.7a | ||||||||
| C27H5.7a.1 | |||||||||
| CE06894 | |||||||||
| C27H5.7b | |||||||||
| CE31320 | |||||||||
| C27H5.7b.1 | |||||||||
| Other_name | CELE_C27H5.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | dyf-13 | ||||||||
| DB_info | Database | AceView | gene | 2H460 | |||||
| WormQTL | gene | WBGene00001129 | |||||||
| WormFlux | gene | WBGene00001129 | |||||||
| NDB | locus_tag | CELE_C27H5.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001129|UniProtKB=Q95QT8 | |||||||
| family | PTHR14781 | ||||||||
| NCBI | gene | 182970 | |||||||
| RefSeq | protein | NM_171019.3 | |||||||
| NM_171020.6 | |||||||||
| SwissProt | UniProtAcc | Q95QT8 | |||||||
| TREEFAM | TREEFAM_ID | TF105816 | |||||||
| UniProt_GCRP | UniProtAcc | Q95QT8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 16 May 2005 18:44:24 | WBPerson2970 | Event | Acquires_merge | WBGene00016176 | ||||
| Acquires_merge | WBGene00016176 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dyf | ||||||||
| Allele (36) | |||||||||
| Legacy_information | [Herman RK] Defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Usually 1-2 amphid neurons dye fill (FITC or DiO). Reduced growth rate and reduced and variable brood sizes. Mildly chemotaxis defective. ME2. | ||||||||
| [C.elegansII] mn396 : defective in dye (FITC or DiO) filling of amphid and phasmid neurons. Usually 1-2 amphid neurons dye fill (FITC or DiO). Reduced growth rate and reduced and variable brood sizes. Mildly chemotaxis defective. ME2. NA1. [Starich et al. 1995] | |||||||||
| Complementation_data | [Herman RK] dyf-13(mn396) complements unc-104(e1265) with respect to dye filling. | ||||||||
| Strain | WBStrain00029032 | ||||||||
| WBStrain00034376 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00088614 | ||||||||
| 00088615 | |||||||||
| 00088616 | |||||||||
| 00088617 | |||||||||
| 00088618 | |||||||||
| 00088619 | |||||||||
| 00088620 | |||||||||
| 00088621 | |||||||||
| 00088622 | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | dyf-13 encodes a ciliary protein, belonging to a conserved butunfamiliar protein family, that is required for cilial function andformation, undergoes IFT, and might represent a core component of theOSM-3 kinesin IFT pathway; dyf-13 is expressed in AWB neurons; dyf-13mutations affect morphology of the amphid and phasmid neurons,chemotaxis, dauer formation, growth, male mating, and hermaphroditebrood size; dyf-13 requires DAF-19 for its transcription. | Paper_evidence | WBPaper00002087 | |||||
| WBPaper00024671 | |||||||||
| WBPaper00026601 | |||||||||
| WBPaper00026666 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 04 Dec 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable intraciliary transport particle B binding activity. Predicted to be involved in intraciliary anterograde transport and intraciliary transport involved in cilium assembly. Predicted to be located in ciliary basal body and ciliary base. Predicted to be part of intraciliary transport particle B. Expressed in neurons. Is an ortholog of human IFT56 (intraflagellar transport 56). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C27H5.7a | |||||||
| C27H5.7b | |||||||||
| Corresponding_transcript | C27H5.7a.1 | ||||||||
| C27H5.7b.1 | |||||||||
| Other_sequence | Oden_isotig05523 | ||||||||
| Oden_isotig05521 | |||||||||
| Dviv_isotig19214 | |||||||||
| Oden_isotig05518 | |||||||||
| ACC18431_1 | |||||||||
| FC541610.1 | |||||||||
| Oden_isotig05519 | |||||||||
| Oden_isotig05520 | |||||||||
| Oden_isotig05522 | |||||||||
| Associated_feature | WBsf047480 | ||||||||
| WBsf650212 | |||||||||
| WBsf988371 | |||||||||
| WBsf988372 | |||||||||
| WBsf1012494 | |||||||||
| WBsf223305 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00011279 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029286 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041378 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3725 | ||||||||
| Expr3733 | |||||||||
| Expr10118 | |||||||||
| Expr11102 | |||||||||
| Expr1026297 | |||||||||
| Expr1145412 | |||||||||
| Expr2011128 | |||||||||
| Expr2029364 | |||||||||
| Drives_construct | WBCnstr00011629 | ||||||||
| WBCnstr00011637 | |||||||||
| WBCnstr00018498 | |||||||||
| WBCnstr00037073 | |||||||||
| Construct_product | WBCnstr00011637 | ||||||||
| WBCnstr00018498 | |||||||||
| WBCnstr00037073 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction | WBInteraction000502137 | ||||||||
| WBInteraction000502138 | |||||||||
| WBInteraction000502139 | |||||||||
| WBInteraction000520978 | |||||||||
| WBInteraction000542900 | |||||||||
| WBInteraction000542913 | |||||||||
| Map_info | Positive | Positive_clone | C27H5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Negative | Outside_rearr | mDf18 | |||||||
| Mapping_data | 2_point | 7008 | |||||||
| Multi_point | 3048 | ||||||||
| 3049 | |||||||||
| 3050 | |||||||||
| 3051 | |||||||||
| 3052 | |||||||||
| Pos_neg_data | 8312 | ||||||||
| 8313 | |||||||||
| 8314 | |||||||||
| 8315 | |||||||||
| 10271 | |||||||||
| Interpolated_map_position | II | 0.496718 | |||||||
| Reference (16) | |||||||||
| Method | Gene |
