WormBase Tree Display for Gene: WBGene00001477
expand all nodes | collapse all nodes | view schema
| WBGene00001477 | SMap | S_parent | Sequence | K08C7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fmo-2 | |||||||
| Sequence_name | K08C7.5 | ||||||||
| Molecular_name | K08C7.5 | ||||||||
| K08C7.5.1 | |||||||||
| CE06138 | |||||||||
| Other_name | fmo-12 | Person_evidence | WBPerson3011 | ||||||
| CELE_K08C7.5 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | fmo-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 20 Sep 2004 14:56:48 | WBPerson1971 | Name_change | CGC_name | fmo-12 -> fmo-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fmo | ||||||||
| Allele (31) | |||||||||
| Strain | WBStrain00036780 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (60) | |||||||||
| Paralog | WBGene00001476 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001478 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001480 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001479 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007254 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016728 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | fmo-2 encodes a flavin-containing monoxygenase homologous to human FMO1, FMO2, and FMO3 (OMIM:602079, mutated in trimethylaminuria). | Paper_evidence | WBPaper00004637 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 May 2007 00:00:00 | ||||||||
| Automated_description | Enables monooxygenase activity. Involved in defense response to Gram-negative bacterium and one-carbon metabolic process. Located in cytoplasm. Expressed in excretory gland cell; head; intestinal cell; intestine; and neurons. Human ortholog(s) of this gene implicated in hypertension and trimethylaminuria. Is an ortholog of several human genes including FMO2 (flavin containing dimethylaniline monoxygenase 2); FMO3 (flavin containing dimethylaniline monoxygenase 3); and FMO4 (flavin containing dimethylaniline monoxygenase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080361 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||
| DOID:655 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| DOID:10763 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:3771) | ||||||
| Molecular_info | Corresponding_CDS | K08C7.5 | |||||||
| Corresponding_transcript | K08C7.5.1 | ||||||||
| Other_sequence | JI211760.1 | ||||||||
| FK804404.1 | |||||||||
| HGC03431_1 | |||||||||
| BXC00339_1 | |||||||||
| CBC02134_1 | |||||||||
| EX538053.1 | |||||||||
| ACC11537_1 | |||||||||
| Associated_feature | WBsf646324 | ||||||||
| WBsf646325 | |||||||||
| WBsf997676 | |||||||||
| WBsf1018126 | |||||||||
| WBsf229021 | |||||||||
| WBsf229022 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050238 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034110 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001310 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061320 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092239 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016781 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3218 | ||||||||
| Expr12637 | |||||||||
| Expr13705 | |||||||||
| Expr15841 | |||||||||
| Expr16306 | |||||||||
| Expr1020750 | |||||||||
| Expr1153933 | |||||||||
| Expr2011857 | |||||||||
| Expr2030095 | |||||||||
| Drives_construct | WBCnstr00011229 | ||||||||
| WBCnstr00022344 | |||||||||
| WBCnstr00022519 | |||||||||
| WBCnstr00036921 | |||||||||
| WBCnstr00039947 | |||||||||
| WBCnstr00042554 | |||||||||
| WBCnstr00042889 | |||||||||
| Construct_product | WBCnstr00022344 | ||||||||
| WBCnstr00036921 | |||||||||
| WBCnstr00039634 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (314) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | IV | Position | 4.66268 | Error | 0.004734 | |||
| Positive | Positive_clone | K08C7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4245 | |||||||
| 4322 | |||||||||
| 4321 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (29) | |||||||||
| Remark | Sequence connection from [Barstead RJ] [040902 ck1] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| This gene has been renamed with approval of the CGC (fmo-12->fmo-2) | Person_evidence | WBPerson3011 | |||||||
| Method | Gene |
