WormBase Tree Display for Gene: WBGene00001485
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WBGene00001485 | Evidence (2) | ||||||||
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SMap | S_parent | Sequence | Y113G7A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | fre-1 | |||||||
Sequence_name | Y113G7A.8 | ||||||||
Molecular_name | Y113G7A.8a | ||||||||
Y113G7A.8a.1 | |||||||||
CE23279 | |||||||||
Y113G7A.8b | |||||||||
CE48258 | |||||||||
Y113G7A.8b.1 | |||||||||
Other_name | tag-62 | CGC_data_submission | |||||||
CELE_Y113G7A.8 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | fre-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fre | ||||||||
Allele (418) | |||||||||
Strain | WBStrain00035603 | ||||||||
WBStrain00031609 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Contained_in_operon | CEOP5500 | ||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00001262 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00006510 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021314 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Concise_description | fre-1 encodes an NADPH-dependent flavin reductase; fre-1 is the downstream gene in an operon with dcs-1, which encodes a scavenger mRNA decapping enzyme; reporter fusions using dcs-1 upstream sequence direct expression throughout the life cycle in neurons and pharyngeal muscle; expression is present in dauer larvae and enhanced by heat shock. | Paper_evidence | WBPaper00006128 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 27 Nov 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable FMN binding activity; flavin adenine dinucleotide binding activity; and oxidoreductase activity. Predicted to be involved in iron-sulfur cluster assembly. Located in nucleus. Expressed in neurons and pharyngeal muscle cell. Is an ortholog of human NDOR1 (NADPH dependent diflavin oxidoreductase 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y113G7A.8a | |||||||
Y113G7A.8b | |||||||||
Corresponding_transcript | Y113G7A.8a.1 | ||||||||
Y113G7A.8b.1 | |||||||||
Other_sequence (45) | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result | WBRNAi00055389 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00036580 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2642 | ||||||||
Expr2644 | |||||||||
Expr1012671 | |||||||||
Expr1158905 | |||||||||
Expr2011877 | |||||||||
Expr2030115 | |||||||||
Drives_construct | WBCnstr00010884 | ||||||||
Construct_product | WBCnstr00010884 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (78) | |||||||||
Interaction (159) | |||||||||
Map_info | Map | V | Position | 24.5786 | Error | 0.027082 | |||
Positive | Positive_clone | Y113G7A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Mapping_data | Multi_point | 4325 | |||||||
4745 | |||||||||
5484 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00006128 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |