WormBase Tree Display for Gene: WBGene00001485
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WBGene00001485 | Evidence | Person_evidence | WBPerson3175 | ||||
---|---|---|---|---|---|---|---|
Author_evidence | Kwasnicka DA | ||||||
SMap | S_parent | Sequence | Y113G7A | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fre | ||||||
Allele (418) | |||||||
Strain | WBStrain00035603 | ||||||
WBStrain00031609 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Contained_in_operon | CEOP5500 | ||||||
Ortholog (38) | |||||||
Paralog | WBGene00001262 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00006510 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00021314 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | fre-1 encodes an NADPH-dependent flavin reductase; fre-1 is the downstream gene in an operon with dcs-1, which encodes a scavenger mRNA decapping enzyme; reporter fusions using dcs-1 upstream sequence direct expression throughout the life cycle in neurons and pharyngeal muscle; expression is present in dauer larvae and enhanced by heat shock. | Paper_evidence | WBPaper00006128 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 27 Nov 2006 00:00:00 | ||||||
Automated_description | Predicted to enable FMN binding activity; flavin adenine dinucleotide binding activity; and oxidoreductase activity. Predicted to be involved in iron-sulfur cluster assembly. Located in nucleus. Expressed in neurons and pharyngeal muscle cell. Is an ortholog of human NDOR1 (NADPH dependent diflavin oxidoreductase 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y113G7A.8a | |||||
Y113G7A.8b | |||||||
Corresponding_transcript | Y113G7A.8a.1 | ||||||
Y113G7A.8b.1 | |||||||
Other_sequence (45) | |||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result | WBRNAi00055389 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036580 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr2642 | ||||||
Expr2644 | |||||||
Expr1012671 | |||||||
Expr1158905 | |||||||
Expr2011877 | |||||||
Expr2030115 | |||||||
Drives_construct | WBCnstr00010884 | ||||||
Construct_product | WBCnstr00010884 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (78) | |||||||
Interaction (159) | |||||||
Map_info | Map | V | Position | 24.5786 | Error | 0.027082 | |
Positive | Positive_clone | Y113G7A | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4325 | |||||
4745 | |||||||
5484 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00006128 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |