WormBase Tree Display for Gene: WBGene00001562
expand all nodes | collapse all nodes | view schema
| WBGene00001562 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | lin-66 | Person_evidence | WBPerson237 | |||||
| Sequence_name | B0513.1 | ||||||||
| Molecular_name | B0513.1a | ||||||||
| B0513.1a.1 | |||||||||
| CE15557 | |||||||||
| B0513.1b | |||||||||
| CE44549 | |||||||||
| B0513.1c | |||||||||
| CE49953 | |||||||||
| B0513.1b.1 | |||||||||
| B0513.1c.1 | |||||||||
| Other_name | gei-5 | Paper_evidence | WBPaper00005194 | ||||||
| Person_evidence | WBPerson1796 | ||||||||
| CELE_B0513.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | lin-66 | ||||||||
| DB_info | Database | AceView | gene | 4O657 | |||||
| WormQTL | gene | WBGene00001562 | |||||||
| WormFlux | gene | WBGene00001562 | |||||||
| NDB | locus_tag | CELE_B0513.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001562|UniProtKB=O62020 | |||||||
| family | PTHR36949 | ||||||||
| NCBI | gene | 178354 | |||||||
| RefSeq | protein | NM_001307065.3 | |||||||
| NM_001268839.3 | |||||||||
| NM_001268838.4 | |||||||||
| TREEFAM | TREEFAM_ID | TF317950 | |||||||
| TrEMBL | UniProtAcc | D3YT69 | |||||||
| A0A061AL58 | |||||||||
| O62020 | |||||||||
| UniProt_GCRP | UniProtAcc | O62020 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | lin-66 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lin | ||||||||
| Allele (89) | |||||||||
| Strain | WBStrain00026527 | ||||||||
| WBStrain00037404 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000409 | ||||||||
| 00000410 | |||||||||
| 00007515 | |||||||||
| 00007516 | |||||||||
| 00007517 | |||||||||
| 00007518 | |||||||||
| 00007519 | |||||||||
| Ortholog (29) | |||||||||
| Paralog | WBGene00007290 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007292 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00007289 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | lin-66 encodes an unfamiliar protein, with visible homologs only in nematodes, that was identified in screens for molecules that interact with GEX-3, a homolog of mammalian protein ligands of the small GTPase Rac1, that is essential for ventral enclosure during embryonic development; LIN-66 is expressed in body wall and vulval muscles, and is also detected in the intestine, neurons, and probably the hypodermis. | Paper_evidence | WBPaper00005194 | |||||
| WBPaper00005480 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Oct 2006 00:00:00 | ||||||||
| Automated_description | Involved in negative regulation of gene expression and regulation of development, heterochronic. Located in cytoplasm. Expressed in body wall musculature; hypodermis; intestine; neurons; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0513.1a | |||||||
| B0513.1b | |||||||||
| B0513.1c | |||||||||
| Corresponding_transcript | B0513.1a.1 | ||||||||
| B0513.1b.1 | |||||||||
| B0513.1c.1 | |||||||||
| Other_sequence | JI169783.1 | ||||||||
| CRC12303_1 | |||||||||
| CJC13711_1 | |||||||||
| ES408882.1 | |||||||||
| HBC03589_1 | |||||||||
| CR10404 | |||||||||
| Associated_feature (14) | |||||||||
| Gene_product_binds | WBsf132690 | ||||||||
| Transcription_factor | WBTranscriptionFactor000140 | ||||||||
| Experimental_info | RNAi_result (13) | ||||||||
| Expr_pattern | Expr1936 | ||||||||
| Expr3196 | |||||||||
| Expr4513 | |||||||||
| Expr1011339 | |||||||||
| Expr1030932 | |||||||||
| Expr1143308 | |||||||||
| Expr2013199 | |||||||||
| Expr2031431 | |||||||||
| Drives_construct | WBCnstr00010528 | ||||||||
| WBCnstr00011209 | |||||||||
| WBCnstr00012071 | |||||||||
| Construct_product | WBCnstr00012071 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (138) | |||||||||
| Interaction (47) | |||||||||
| WBProcess | WBbiopr:00000083 | ||||||||
| Map_info | Map | IV | Position | 10.9018 | Error | 0.001388 | |||
| Positive | Positive_clone | B0513 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
