WormBase Tree Display for Gene: WBGene00001568
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| WBGene00001568 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F32H2 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | snpc-4 | Person_evidence | WBPerson2290 | |||||
| Sequence_name | F32H2.1 | ||||||||
| Molecular_name | F32H2.1a | ||||||||
| F32H2.1a.1 | |||||||||
| CE09876 | |||||||||
| F32H2.1b | |||||||||
| CE17749 | |||||||||
| F32H2.1b.1 | |||||||||
| Other_name | gei-11 | Person_evidence | WBPerson1796 | ||||||
| CELE_F32H2.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | snpc-4 | ||||||||
| DB_info | Database | AceView | gene | 1J541 | |||||
| WormQTL | gene | WBGene00001568 | |||||||
| WormFlux | gene | WBGene00001568 | |||||||
| NDB | locus_tag | CELE_F32H2.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001568|UniProtKB=P91868 | |||||||
| family | PTHR46621 | ||||||||
| NCBI | gene | 172711 | |||||||
| RefSeq | protein | NM_060010.6 | |||||||
| NM_060011.5 | |||||||||
| SwissProt | UniProtAcc | P91868 | |||||||
| TREEFAM | TREEFAM_ID | TF313064 | |||||||
| UniProt_GCRP | UniProtAcc | P91868 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 04 Jul 2013 14:01:25 | WBPerson2970 | Name_change | CGC_name | snpc-4 | ||||
| Other_name | gei-11 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snpc | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00051513 | ||||||||
| 00051514 | |||||||||
| 00051515 | |||||||||
| 00051516 | |||||||||
| 00051517 | |||||||||
| 00051518 | |||||||||
| 00051519 | |||||||||
| 00051520 | |||||||||
| 00105872 | |||||||||
| Contained_in_operon | CEOP1512 | ||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00008386 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in protein folding. Predicted to be located in nucleus. Predicted to be part of snRNA-activating protein complex. Expressed in germ cell; head neurons; intestine; and somatic gonad. Is an ortholog of human SNAPC4 (small nuclear RNA activating complex polypeptide 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F32H2.1a | |||||||
| F32H2.1b | |||||||||
| Corresponding_transcript | F32H2.1a.1 | ||||||||
| F32H2.1b.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature | WBsf643565 | ||||||||
| WBsf656669 | |||||||||
| WBsf656670 | |||||||||
| WBsf656671 | |||||||||
| WBsf656672 | |||||||||
| WBsf978461 | |||||||||
| WBsf984547 | |||||||||
| WBsf218233 | |||||||||
| WBsf218234 | |||||||||
| Gene_product_binds (11530) | |||||||||
| Transcription_factor | WBTranscriptionFactor000023 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr11562 | ||||||||
| Expr12057 | |||||||||
| Expr12058 | |||||||||
| Expr1012206 | |||||||||
| Expr1030937 | |||||||||
| Expr1150046 | |||||||||
| Expr2015963 | |||||||||
| Expr2034198 | |||||||||
| Drives_construct | WBCnstr00007734 | ||||||||
| WBCnstr00037969 | |||||||||
| Construct_product | WBCnstr00007734 | ||||||||
| WBCnstr00019875 | |||||||||
| WBCnstr00037969 | |||||||||
| WBCnstr00039303 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (55) | |||||||||
| Product_binds_matrix | WBPmat00005553 | ||||||||
| WBPmat00005555 | |||||||||
| WBPmat00005563 | |||||||||
| Map_info | Map | I | Position | 3.33452 | Error | 0.001002 | |||
| Positive | Positive_clone | F32H2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
