WormBase Tree Display for Gene: WBGene00001569
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| WBGene00001569 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F52D2 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | meg-3 | Person_evidence | WBPerson261 | |||||
| WBPerson9884 | |||||||||
| WBPerson575 | |||||||||
| Sequence_name | F52D2.4 | ||||||||
| Molecular_name | F52D2.4 | ||||||||
| F52D2.4.1 | |||||||||
| CE23757 | |||||||||
| Other_name | gei-12 | Person_evidence | WBPerson1796 | ||||||
| CELE_F52D2.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | meg-3 | ||||||||
| DB_info | Database | AceView | gene | XC606 | |||||
| WormQTL | gene | WBGene00001569 | |||||||
| WormFlux | gene | WBGene00001569 | |||||||
| NDB | locus_tag | CELE_F52D2.4 | |||||||
| NCBI | gene | 180510 | |||||||
| RefSeq | protein | NM_075966.6 | |||||||
| TREEFAM | TREEFAM_ID | TF322203 | |||||||
| TrEMBL | UniProtAcc | Q9TXM1 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXM1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:24 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 15 Aug 2014 16:05:09 | WBPerson2970 | Name_change | CGC_name | meg-3 | ||||
| Other_name | gei-12 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | meg | ||||||||
| Allele (59) | |||||||||
| Strain (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Ortholog | chrX_pilon.g18541 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Paralog | WBGene00018688 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00016485 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00219451 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | meg-3 encodes a novel protein that affects embryonic viability and development of the hypodermis; MEG-3 interacts with GEX-3 in yeast two-hybrid assays, and is expressed in all somatic cells. | Paper_evidence | WBPaper00005194 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 30 Jan 2015 00:00:00 | ||||||||
| Automated_description | Involved in embryo development; gamete generation; and organelle localization. Located in P granule. Expressed in several structures, including germ cell and oocyte. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F52D2.4 | |||||||
| Corresponding_transcript | F52D2.4.1 | ||||||||
| Associated_feature | WBsf653716 | ||||||||
| WBsf1004196 | |||||||||
| WBsf1022389 | |||||||||
| WBsf237042 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00024287 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047973 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061662 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015403 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032611 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2089 | ||||||||
| Expr12114 | |||||||||
| Expr12116 | |||||||||
| Expr1030938 | |||||||||
| Expr1151789 | |||||||||
| Expr2013510 | |||||||||
| Expr2031744 | |||||||||
| Drives_construct | WBCnstr00021878 | ||||||||
| WBCnstr00037968 | |||||||||
| Construct_product | WBCnstr00021878 | ||||||||
| WBCnstr00022631 | |||||||||
| WBCnstr00037968 | |||||||||
| WBCnstr00040205 | |||||||||
| Regulate_expr_cluster | WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_downregulated | ||||||||
| WBPaper00057140:meg-3(tm4259)_meg-4(ax2026)_upregulated | |||||||||
| WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets | |||||||||
| WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_upregulated_endo-siRNA_targets | |||||||||
| WBPaper00057162:meg-3_meg-4_downregulated_sRNA | |||||||||
| WBPaper00057162:meg-3_meg-4_upregulated_sRNA | |||||||||
| WBPaper00059174:MEG-3_interacting | |||||||||
| Antibody | WBAntibody00002617 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (222) | |||||||||
| Interaction (100) | |||||||||
| Map_info | Map | X | Position | -17.0968 | Error | 0.017536 | |||
| Positive | Positive_clone | F52D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (24) | |||||||||
| Remark | Sequence connection from [Qadota H, Kaibuchi K] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
