WormBase Tree Display for Gene: WBGene00001629
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| WBGene00001629 | SMap | S_parent | Sequence | Y116F11B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-4 | Person_evidence | WBPerson228 | |||||
| Sequence_name | Y116F11B.12 | ||||||||
| Molecular_name | Y116F11B.12a | ||||||||
| Y116F11B.12a.1 | |||||||||
| CE26046 | |||||||||
| Y116F11B.12b | |||||||||
| CE32074 | |||||||||
| Y116F11B.12c | |||||||||
| CE44035 | |||||||||
| Y116F11B.12a.2 | |||||||||
| Y116F11B.12b.1 | |||||||||
| Y116F11B.12c.1 | |||||||||
| Other_name | Y116F11B.m | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y116F11B.n | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y116F11B.12 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | gly-4 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (622) | |||||||||
| Strain | WBStrain00032858 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP5496 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00001628 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001631 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001632 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001635 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001633 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001636 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012934 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001630 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | gly-4 encodes a UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase; GLY-4 exhibits UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase activity in vitro. | Paper_evidence | WBPaper00003042 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 11 Apr 2012 00:00:00 | ||||||||
| Automated_description | Enables polypeptide N-acetylgalactosaminyltransferase activity. Involved in protein O-linked glycosylation via threonine. Predicted to be located in Golgi apparatus. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type II. Is an ortholog of human GALNT2 (polypeptide N-acetylgalactosaminyltransferase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050571 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4124) | ||||
| Molecular_info | Corresponding_CDS | Y116F11B.12a | |||||||
| Y116F11B.12b | |||||||||
| Y116F11B.12c | |||||||||
| Corresponding_CDS_history | Y116F11B.12:wp87 | ||||||||
| Corresponding_transcript | Y116F11B.12a.1 | ||||||||
| Y116F11B.12a.2 | |||||||||
| Y116F11B.12b.1 | |||||||||
| Y116F11B.12c.1 | |||||||||
| Other_sequence (47) | |||||||||
| Associated_feature (20) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027751 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115339 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055476 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017554 | ||||||||
| Expr1030976 | |||||||||
| Expr1158984 | |||||||||
| Expr2012144 | |||||||||
| Expr2030380 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (86) | |||||||||
| Interaction | WBInteraction000030785 | ||||||||
| WBInteraction000136846 | |||||||||
| WBInteraction000136847 | |||||||||
| WBInteraction000136848 | |||||||||
| WBInteraction000136849 | |||||||||
| WBInteraction000136850 | |||||||||
| WBInteraction000563148 | |||||||||
| Map_info | Map | V | Position | 23.7607 | Error | 0.041236 | |||
| Positive | Positive_clone | Y116F11B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003042 | ||||||||
| WBPaper00005408 | |||||||||
| WBPaper00017620 | |||||||||
| WBPaper00019629 | |||||||||
| WBPaper00026630 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045573 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
