WormBase Tree Display for Gene: WBGene00001644
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| WBGene00001644 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | gly-19 | Person_evidence | WBPerson228 | |||||
| Sequence_name | F22D6.12 | ||||||||
| Molecular_name | F22D6.12 | ||||||||
| F22D6.12.1 | |||||||||
| CE29590 | |||||||||
| F22D6.12.2 | |||||||||
| Other_name | CELE_F22D6.12 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | gly-19 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:25 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gly | ||||||||
| Allele (28) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00009771 | ||||||||
| 00009772 | |||||||||
| 00009773 | |||||||||
| 00009774 | |||||||||
| 00009775 | |||||||||
| 00009776 | |||||||||
| 00109187 | |||||||||
| 00109188 | |||||||||
| Ortholog (62) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | gly-19 encodes a 2/I N-acetylglucosaminyltransferase; a gly-19::gfp promoter fusion is expressed in the intestine and in the anal sphincter muscle from embryogensis through adulthood. | Paper_evidence | WBPaper00005030 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 01 Aug 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable glycosyltransferase activity. Predicted to be located in Golgi membrane. Expressed in anal sphincter muscle and intestine. Human ortholog(s) of this gene implicated in cataract 13 with adult i phenotype. Is an ortholog of several human genes including GCNT1 (glucosaminyl (N-acetyl) transferase 1); GCNT3 (glucosaminyl (N-acetyl) transferase 3, mucin type); and GCNT4 (glucosaminyl (N-acetyl) transferase 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110242 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4204) | ||||
| DOID:83 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:4204) | ||||||
| Molecular_info | Corresponding_CDS | F22D6.12 | |||||||
| Corresponding_CDS_history | F22D6.12:wp57 | ||||||||
| Corresponding_transcript | F22D6.12.1 | ||||||||
| F22D6.12.2 | |||||||||
| Other_sequence | Acan_isotig03421 | ||||||||
| Acan_isotig03420 | |||||||||
| Associated_feature | WBsf643426 | ||||||||
| WBsf217951 | |||||||||
| WBsf217952 | |||||||||
| WBsf217953 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003424 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031269 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114769 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00045313 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000252 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1787 | ||||||||
| Expr1018475 | |||||||||
| Expr1149237 | |||||||||
| Expr2012139 | |||||||||
| Expr2030375 | |||||||||
| Drives_construct | WBCnstr00010444 | ||||||||
| WBCnstr00016644 | |||||||||
| WBCnstr00022801 | |||||||||
| WBCnstr00023125 | |||||||||
| WBCnstr00036802 | |||||||||
| WBCnstr00038068 | |||||||||
| WBCnstr00038245 | |||||||||
| Construct_product | WBCnstr00036802 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (121) | |||||||||
| SAGE_tag | SAGE:aaataattga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tgtttttgga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:catttggatataattga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:catttggata | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gcaagacctc | Strand | Antisense | |||||||
| SAGE:tcacaactga | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcacaactgacacatca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000122991 | ||||||||
| WBInteraction000166767 | |||||||||
| WBInteraction000208150 | |||||||||
| WBInteraction000395677 | |||||||||
| WBInteraction000439042 | |||||||||
| Map_info | Map | I | Position | 1.76127 | Error | 0.004662 | |||
| Positive | Positive_clone | F22D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005030 | ||||||||
| WBPaper00023337 | |||||||||
| WBPaper00029024 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064634 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
